Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1933 ATGGGGTCAGCTTGTCAAGTTGCTGCAAGGGATAGATCTTTACCAGAGAGAATTGATGGAGAAAGGTCGCAAAACAGTACCTTGTATTCATCATCATGGAGCTTTTGCTGGGATAACCGTAGGCATGCGACTGGTGAAGTTGAGAATCCAATGCATCGAGTGTCTCATGGATCAGACAGCGTAGAAATAAAAGGAACATTAGGTTCCGAGAGAAGTACTATCTCGGGTGTAAGTTCTCAGGAACATTTTAGAACACCTATTTCCCAAAAGTCTCTAAATCATGAAGAAATACATACCAAGGCAATGACTGCAGCTTCAGTTCCGTCCATGGCAAGCATTTATCCTACAGAGGTCAATATCATTACAGAATCTCCTGCAATTGTAGATTCACCTGCACGTAATCCTCCGTCTTCATTACCTTCAACGCTCTCAACACTGACTACAGATCATTTGTCTTCCAATATCTATCCACTTCTCAACTCCACACCATCTAGGCGGGCCCGTAGGTCGCCAGGGCACCAATTATTTAGACAGGTTTCTGATAGTCAGATCCTGGGATTGAATTTACCAACTAACAACTCCATAGCCAAAGAAACACCATCTTATGCACCCTCTAATTGCAGCAATGACTTAGCAGCAGGGTCAGAATTTGGATCTTCTGATGGGTGGTCCATGCGCACCTTTTCTGAGCTTGTGGCTTCTTCTCAAAGAGAAAGATGGTCTTTTGATAGTGAGCACTTAAGCTCTGTGCATGGCCAAATAAGTGGATCTAGCAGCAGGTTTGTTAGTTCTCCTTCATCGGAGCTTCAAACCTGTGGAGCTTGCTCAAAACACTTAACTGAAAGATCTCTATGGAGTGGCAGGAAAACTATTTCTCAAAATCAGCTAGCAGTAATTGCTGTGCTGGGTTGTGGACATGTTTATCATGCAGACTGCTTGGAAGCTATGACAGAAGAGACTGATGGGTATGACCCAACTTGCCCAGTTTGCATGGGTGGAGAGAAGCAAGTCTCAAAGATGTCCAGAGAAGATGCAGATTTAAAGGGGAGGAACTACAGGATATCGAAAAACCGGGGTGTTGATAGTTATCTTGACGACGCCTTCAATGTTTTTAATCACCTTAAACACATTGAAGAAAAAGGAAAAGTAGTTAGGGTGGGGAGCGGTTCAAGTTCAATGAGTACCTTTGCAAAGCCCTTCTTAAGACGGCACTTTTCAGTTGGGTCTAAATGGAGTAGGTCTCTATCAGATAATAATTCTCCGAGGAAGAAAGGTTTTTGGGGTAGATACCGCAGGGATTAA 1302 43.47 MGSACQVAARDRSLPERIDGERSQNSTLYSSSWSFCWDNRRHATGEVENPMHRVSHGSDSVEIKGTLGSERSTISGVSSQEHFRTPISQKSLNHEEIHTKAMTAASVPSMASIYPTEVNIITESPAIVDSPARNPPSSLPSTLSTLTTDHLSSNIYPLLNSTPSRRARRSPGHQLFRQVSDSQILGLNLPTNNSIAKETPSYAPSNCSNDLAAGSEFGSSDGWSMRTFSELVASSQRERWSFDSEHLSSVHGQISGSSSRFVSSPSSELQTCGACSKHLTERSLWSGRKTISQNQLAVIAVLGCGHVYHADCLEAMTEETDGYDPTCPVCMGGEKQVSKMSREDADLKGRNYRISKNRGVDSYLDDAFNVFNHLKHIEEKGKVVRVGSGSSSMSTFAKPFLRRHFSVGSKWSRSLSDNNSPRKKGFWGRYRRD 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13672614 13675637 + Conep04aG0199500.1 Cone4ag1933 436911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1933 433 SUPERFAMILY RING/U-box 271 331 - -
Cone4ag1933 433 ProSiteProfiles Zinc finger RING-type profile. 272 330 IPR001841 -
Cone4ag1933 433 PANTHER EXPRESSED PROTEIN 1 336 - -
Cone4ag1933 433 MobiDBLite consensus disorder prediction 1 23 - -
Cone4ag1933 433 MobiDBLite consensus disorder prediction 411 433 - -
Cone4ag1933 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Cone4ag1933 433 SMART ring_2 272 330 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1933 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0645 Cone-Chr4:3045162 Cone4ag1933 Cone-Chr4:13672614 5.53E-10 dispersed
Cone4ag1933 Cone-Chr4:13672614 Cone7ag0606 Cone-Chr7:2934365 4.76E-10 dispersed
Cone10ag1114 Cone-Chr10:7939362 Cone4ag1933 Cone-Chr4:13672614 2.25E-78 transposed
Cone3ag0970 Cone-Chr3:5885130 Cone4ag1933 Cone-Chr4:13672614 2.97E-79 transposed
Cone4ag1933 Cone-Chr4:13672614 Cone7ag1845 Cone-Chr7:11973578 3.28E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1933 Cone7ag1845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00392 Cam11g0437 Cec11g0432 Cco11g0426 Clacu11g0560 Cmu11g0417 Cre11g0902 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023688 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3