Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1937 ATGGCTTTCTTAAAACTCTGTCTGTCATTAATGGCTTTCATCCTATCCACCTTCACCTTCTCATCTCATGCCCACCCAGTTTTCAACTTCGGTTGGGGCGTTGGCATTGGCGGCGGTGGCGGAAGCAGCTATAATAATAATAATTACTTTGGTCTCTTCCCTGACTTCTATCAATTTTCATGTCCTCAAGCCAATGATATAGTAATGTCTGTTTTGGAAAATGCCATTTCAAAGCAACCCAGAATCGCTGCTTCTCTGCTTCGCCTTCATTTCCATGACTGCTTCGCGCAGGGCTGCGATGCATCGGTGTTGTTAGATACTAGTGCTCAATTCGTGAGTGAAAAGAATGCTCTTCCAAACAAAAACTCCATACGAGGATTCGAAGTGATTGATGAAATCAAGGCTAAGTTGGAAGAAGCATGTCCGCTTACTGTTTCCTGTGCAGATATCCTTGCCCTTGCTGCTCGTGCTTCCACGATTCTGAGTGGTGGGCCATCATGGGAGCTTCCACTAGGACGCAGAGATTCTAAAACAGCAAACATCAATCTCTCCAACACCAACATTCCAGCTCCAAACTCGACAATCCAAAACCTCTTGACCTTCTTCCAACGCCAAGGCCTTGATGAAGTCGATCTTGTTGCACTCTCAGGGGGGCATACAATCGGAGTGGCACGTTGTGTGACGTTCAAACAGAGGCTATACAACCAAAACGGCAACAATCAACCCGACGAAACGCTAGAGAGATCTTACTACTTCGGTTTGAAATCAGTTTGCCCAACTGCAGGCGGGGATAACAACATTACTCCATTGGACTTGGCTTCCCCGACCAAATTTGACAACACTTACTTCAAGATGATATTGTGGGGTAAAGGGCTGTTGAACTCGGATGAAGTGCTTTGGACTGGGAATGTCAAAACGACGATGGATTTGGTCAAGACTTATGCAGAAGATGAGGGGCTGTTCTTTGACCAGTTTGCTTTGTCGATGGTGAAGATGGGAAATATTAGTCCTCTTTTGGGTTTTGATGGTGAAGTTAGGAAGTATTGTCGCCGGGTTAACTCAGCGAATTAA 1071 45.47 MAFLKLCLSLMAFILSTFTFSSHAHPVFNFGWGVGIGGGGGSSYNNNNYFGLFPDFYQFSCPQANDIVMSVLENAISKQPRIAASLLRLHFHDCFAQGCDASVLLDTSAQFVSEKNALPNKNSIRGFEVIDEIKAKLEEACPLTVSCADILALAARASTILSGGPSWELPLGRRDSKTANINLSNTNIPAPNSTIQNLLTFFQRQGLDEVDLVALSGGHTIGVARCVTFKQRLYNQNGNNQPDETLERSYYFGLKSVCPTAGGDNNITPLDLASPTKFDNTYFKMILWGKGLLNSDEVLWTGNVKTTMDLVKTYAEDEGLFFDQFALSMVKMGNISPLLGFDGEVRKYCRRVNSAN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13681554 13682984 - Conep04aG0199900.1 Cone4ag1937 436915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1937 356 CDD secretory_peroxidase 51 352 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 85 105 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 163 178 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 210 222 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 327 340 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 144 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 269 284 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 61 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 285 302 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Plant peroxidase signature 125 138 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 FunFam Peroxidase 189 332 - -
Cone4ag1937 356 ProSitePatterns Peroxidases active site signature. 83 94 IPR019794 GO:0004601(InterPro)
Cone4ag1937 356 FunFam Peroxidase 55 197 - -
Cone4ag1937 356 Gene3D Peroxidase, domain 2 189 332 - -
Cone4ag1937 356 ProSitePatterns Peroxidases proximal heme-ligand signature. 211 221 IPR019793 -
Cone4ag1937 356 Pfam Peroxidase 69 317 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 ProSiteProfiles Plant heme peroxidase family profile. 51 353 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 SUPERFAMILY Heme-dependent peroxidases 52 353 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 Gene3D - 56 353 - -
Cone4ag1937 356 PRINTS Haem peroxidase superfamily signature 163 175 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Haem peroxidase superfamily signature 211 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Haem peroxidase superfamily signature 83 97 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Haem peroxidase superfamily signature 271 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PRINTS Haem peroxidase superfamily signature 145 162 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cone4ag1937 356 PANTHER PEROXIDASE 72-RELATED 15 352 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0780 Cone-Chr12:7133940 Cone4ag1937 Cone-Chr4:13681554 1.18E-127 dispersed
Cone4ag1937 Cone-Chr4:13681554 Cone5ag0153 Cone-Chr5:650032 4.52E-100 dispersed
Cone4ag1937 Cone-Chr4:13681554 Cone6ag1651 Cone-Chr6:12612075 3.63E-141 wgd
Cone4ag1937 Cone-Chr4:13681554 Cone7ag1849 Cone-Chr7:11981829 2.74E-146 wgd
Cone4ag1937 Cone-Chr4:13681554 Cone9ag1575 Cone-Chr9:11337036 4.22E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1937 K00430 - ath:AT1G44970 511.146