Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1938 ATGGTTTCTCAAAACTCCCCTCCAAATCCAGGATCATCAAACATTCTACACCAGTTCATAAACTCAGGCTCCATTACAAGCCAACCCCATTTCCATTATCATCATTTCAATGATGCATACAACAACCACCCTCATCACTCTCTTGCCTTTTTCCCGGGAGAAAGAATCTCTAGGCCCATAGATCTTGTCCAAGACCCTCCTAATTCGGCACAAGACGAACCCAAAATCAGCCACACCAGACACTTGATGGATCTTCTCGGAGCAGCGGCCAACGAGACTAACCGTCAAGCTCGAGGCCTGTCCCTCTCTCTTAGCACACACATGCCTTTCCCTTCTTCAGTGGACTATAATAGGCAGAGAACTTGTTCAAATTCAGATCTTATCAACTCCAATTACTTAACCGAACAGCAATTAAGTGAAGAATATTCTTATCTGACTGGTGCATTTGCTGCTGCTTCATCATCATCTTCATCGTCATCGTTGTTCTCTACTGTTCTTTGCAACTCAAGATATCTAAAACCAGCTCAGTCTCTTCTAGAAGAAGTAGTTAACCTCGGCTTAAAAGCTGTCGGTATAAGCGATGAGATCATGTATTCTGGAAGTAGTAGAAGAGAAGCTCTGAGTTTTTCTGCTGAATTGAAAGCAGGGCTTTGCAATAACGAGTTCTTATCAGGGGAGAAACAAGAACATCAACTTAGAATCTCAAAGCTCATTGCCTTGCTGGAGGAGGTCGATGGTAGGTACGAAAAGTATTGTCATCAAATGGAAGAAGTGGTATCATCATTTGAAGTAATAGCCGGATTAGGGGCGGCAAGATCTTATACTGCACTAGCACTTGAAGCCATGTCCAGGCATTTTAGTAGCCTAAGAGATGCCATATTTTATCATATTAAAGTGGAGAAAAGAAAGCTCTTGCACGGTTTACCAAAAATTAATTCCGGATTATCGCGGCTAAGCTTGTTTGATAGAGAGACAAGAAATAGCAGAACAGCACTTCAACGGCTAGGATTGCTTCAAAGTCCAGGACAAGTATGGAGACCGATCAGAGGATTGCCTGAGACCTCTGTCACTATCCTACGCTCTTGGCTTTTCGAACATTTTCTCCACCCGTATCCAGATGATTCTGAGAAGCTAATGTTAGCATCACAGACAGGTCTCAGCAAGAACCAAGTTTCAAATTGGTTCATTAACGCCCGGGTTCGCCTTTGGAAGCCGATGATAGAAGAAATGTATAAAGAAGAGTTCGGCGAATCATCAGAAGACTCAAATCTGTTAGCTAGCGGTTCATTGACCGGAGAAGGCTTCACAGATCATGGAGAAGACTGA 1326 43.14 MVSQNSPPNPGSSNILHQFINSGSITSQPHFHYHHFNDAYNNHPHHSLAFFPGERISRPIDLVQDPPNSAQDEPKISHTRHLMDLLGAAANETNRQARGLSLSLSTHMPFPSSVDYNRQRTCSNSDLINSNYLTEQQLSEEYSYLTGAFAAASSSSSSSSLFSTVLCNSRYLKPAQSLLEEVVNLGLKAVGISDEIMYSGSSRREALSFSAELKAGLCNNEFLSGEKQEHQLRISKLIALLEEVDGRYEKYCHQMEEVVSSFEVIAGLGAARSYTALALEAMSRHFSSLRDAIFYHIKVEKRKLLHGLPKINSGLSRLSLFDRETRNSRTALQRLGLLQSPGQVWRPIRGLPETSVTILRSWLFEHFLHPYPDDSEKLMLASQTGLSKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNLLASGSLTGEGFTDHGED 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13683402 13687232 - Conep04aG0200000.1 Cone4ag1938 436916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1938 441 Pfam Associated with HOX 165 293 IPR006563 -
Cone4ag1938 441 CDD homeodomain 345 406 IPR001356 GO:0003677(InterPro)
Cone4ag1938 441 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 419 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone4ag1938 441 SMART prehox3 160 295 IPR006563 -
Cone4ag1938 441 MobiDBLite consensus disorder prediction 418 441 - -
Cone4ag1938 441 Pfam Homeobox KN domain 362 401 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone4ag1938 441 SMART HOX_1 345 409 IPR001356 GO:0003677(InterPro)
Cone4ag1938 441 Gene3D - 344 420 - -
Cone4ag1938 441 ProSiteProfiles 'Homeobox' domain profile. 364 405 IPR001356 GO:0003677(InterPro)
Cone4ag1938 441 SUPERFAMILY Homeodomain-like 351 412 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1938 Cone-Chr4:13683402 Cone8ag0284 Cone-Chr8:1635714 1.82E-65 dispersed
Cone4ag1938 Cone-Chr4:13683402 Cone4ag1939 Cone-Chr4:13687752 2.17E-68 tandem
Cone12ag1171 Cone-Chr12:9284332 Cone4ag1938 Cone-Chr4:13683402 8.29E-68 wgd
Cone4ag1938 Cone-Chr4:13683402 Cone7ag1850 Cone-Chr7:11983330 9.04E-290 wgd
Cone4ag1938 Cone-Chr4:13683402 Cone8ag1218 Cone-Chr8:10314758 3.07E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46070 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1938 - - - 0.0