Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1939 ATGGCTACTTATGTCCAAAACTTGAGCAATCAAAGAGATGCTATGCTGGCTCCTTACGCAGGAGACCAGAAGTTCAGTTCTTATTCGGAACCGCCTTTATGTTCTGGTAACATCTCGTTAGACTCGAATCAACATCATTATCTTGGACCCTACTCTGATATCTTGTCTCAAGGATTGCCACCACCTATAGACACCAGAATTGGTTTTCAAGCCTTTGTGGACCAGGAAAAATCCGAAGCAAGCGATCAAGATGGATTGTCATTGAGCCTCGGATCACAGTTAGTCCATAGTTCTATCTCCGACCCTTCATTTTCGTTCTTGAATTCTCATCCTCCGATATTAGAAATATGTCCAGTAGGTTGTGAAGCGGATGAAGGAAAACACACTACTTTCAAAACAGAGGCTTTGTCTCATAGAACAACCTCGGATCTCTATCAGCTATACAACGTGCCTGGTTTTTCTTCAAACACTATGTTTAGCTCGAAATACCTCAAGGCGGCACAACAATTGCTTGATGAAGTGGTTAATGTTCAAGAGGCTTTGAAGGAGTTTAAGTTTAACAAAAAGAATAACTTCAATGAAACTGATCCAGATGGAGGATCTAACAACCGAGATTTGAAGGCTAACTTATCTACCGAGCTATCGCCTTTAGAGCGTCGAGACTTGAAGAATAGAAGTAACAAACTTTTGTCCATGTTAAATGAGGTAGATAGAAGATACAAGCTATACTGCCATCAGATGAAAACTATGGTGTCATCATTTAACACGGTAATGGGAATTGGGGCAGCAGAGTCATACATGGAACTTGCTCTCCAAACAATTTCCAGCCACTTCCGACGATTGCGGGATGCAATTAGCGAGCAGATTCTGGTCAACAGGAGAATCTTGGAAGAGCAAGATTCTTCACTAAGTGGTCAAGATATAATACCGTCTCTCCGCTATGTAGACCAGCAGCTCAGACAACAAACTTATTTTCAACATCTTGGTCTGTCCCCGCATTCTTGGAGGCCTCAAAGAGGCCTTCCTCAAACCTCCGTTTCGATTCTCCGTGCTTGGCTGTTTGAACATTTCCTTCATCCATACCCGAAGGATTCGGAGAAAATTATGCTAGCAAGAGAGACTGGGTTGACAAAAAATCAGGTTGCGAATTGGTTTATAAATGCTCGAGTTCGTCTGTGGAAACCTATGGTTGAGGAGATGCATAAGAAGGAATTCGGAGATTCTTTGATAGATCTTAAATCTTCACCAGAAAATCCACAGAAGGATGATAACAATGCGCAAGACATTAAGCAATCAGGCCGGAATTGTGACGATAACTTTCCAGGCGATGTTACCACATGTGACATATCAAAGTTGGGTTATTTTTGTGTTGGCAATGATGTATCACTTTCTTTAGAGCTCCGTCGCTTTGAGAAGGAAGAATATTCCGTTTCCGGTGGGGCCCAAACTGTAAGTAGTAATGCAGAGGATGCTTCCTCTGTGGGGCTTGAGTCAATGGCTACATGTAGATTTGGAACTTCTTTGCTACAAGATTTTGTAATCTGA 1545 42.07 MATYVQNLSNQRDAMLAPYAGDQKFSSYSEPPLCSGNISLDSNQHHYLGPYSDILSQGLPPPIDTRIGFQAFVDQEKSEASDQDGLSLSLGSQLVHSSISDPSFSFLNSHPPILEICPVGCEADEGKHTTFKTEALSHRTTSDLYQLYNVPGFSSNTMFSSKYLKAAQQLLDEVVNVQEALKEFKFNKKNNFNETDPDGGSNNRDLKANLSTELSPLERRDLKNRSNKLLSMLNEVDRRYKLYCHQMKTMVSSFNTVMGIGAAESYMELALQTISSHFRRLRDAISEQILVNRRILEEQDSSLSGQDIIPSLRYVDQQLRQQTYFQHLGLSPHSWRPQRGLPQTSVSILRAWLFEHFLHPYPKDSEKIMLARETGLTKNQVANWFINARVRLWKPMVEEMHKKEFGDSLIDLKSSPENPQKDDNNAQDIKQSGRNCDDNFPGDVTTCDISKLGYFCVGNDVSLSLELRRFEKEEYSVSGGAQTVSSNAEDASSVGLESMATCRFGTSLLQDFVI 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13687752 13689566 - Conep04aG0200100.1 Cone4ag1939 436917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1939 514 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 105 428 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone4ag1939 514 CDD homeodomain 335 396 IPR001356 GO:0003677(InterPro)
Cone4ag1939 514 ProSiteProfiles 'Homeobox' domain profile. 332 395 IPR001356 GO:0003677(InterPro)
Cone4ag1939 514 SUPERFAMILY Homeodomain-like 336 401 IPR009057 -
Cone4ag1939 514 Pfam Associated with HOX 159 286 IPR006563 -
Cone4ag1939 514 Coils Coil 167 187 - -
Cone4ag1939 514 Pfam Homeobox KN domain 352 391 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone4ag1939 514 SMART HOX_1 335 399 IPR001356 GO:0003677(InterPro)
Cone4ag1939 514 Gene3D - 332 408 - -
Cone4ag1939 514 SMART prehox3 155 287 IPR006563 -
Cone4ag1939 514 MobiDBLite consensus disorder prediction 410 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1939 Cone-Chr4:13687752 Cone7ag1851 Cone-Chr7:11987792 2.22E-279 dispersed
Cone4ag1938 Cone-Chr4:13683402 Cone4ag1939 Cone-Chr4:13687752 2.17E-68 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46071 PF13041 PPR_2 5.20E-10 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1939 - - - 0.0