Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1943 ATGGCGTCTCTGTTATCTCTCCAGCCTTCAACTTCGTTTCTCTCTCAAGATTATACATTGTTCTTCAGCTGCAAATTTCCAAAGAGGCATAACCGGTATGGAAGCTACTTGAAAGATTATATCCACGACACAGTTAAGTGCAGACTTTCCAGAGCCAAGGAATCTCCTTCCGCAAATTCCTCTACATTGATTAGGGAGCCTCACAAGTACTTTGATCAGGCCATCATCACAGTTCGTTCAGGAGATGGAGGCCATGGTGCAGTCCTTAACGTGCCTAACCAGCAAGCCAGCAATTCACCAGGGAAACATGGGAAGGAGAAGGCGAGGAAGAAACCCTTGTTCAAAAGGGATTTTGATGGTTCTTTAATCCTTCCAGTAGGTGGACACGGTGGGGATGTAGTAATTTATGCTGATGAAGGAAAAGATACATTGTTGGAGTTTCATACTAAAGGCCGTTATAATGCAAAACGGGGTGGAAATGTTGATACTATGGGTGGTCTGTCCTCACAATTGCGTGATGGACTTGCTGCCCCAACTCTGCGAATTCCTGTGCCTCTAGGCACAGTTATAAAACGTAAAAGAGGGAAGCTGTTGGGTGATCTAGCACATCCAGGTGATGAGATCCTCGTTGCTAGGGGGGGACAAGGAGGGATCAGCTTGTTAGATATGCCAGCGCAGAGAAGGAAGAAGTCAATGGCTCTGACTATTAATGTGATGAGAGATGACAGTGACAAGGTTTTAGCTCTTGGTCAACCTGGGGAGGAGGTCAGTCTGGAGTTGATTCTTCGTGTTGTTGCTGATGTTGGTCTCATTGGACTTCCGAATGCTGGAAAATCAACCCTATTGGCAGCCATTACACTAGCAAAACCTGATATTGCTGATTATCCTTTCACAACATTAATGCCTAACCTTGGACGTCTTGGTGGGGACCCTAGCCTTGGGGCAGGGATGTATCAATCTGAAGCCACTTTAGCAGATCTACCTGGTCTTATAGAAGGTGCTCATTTGGGGAAGGGACTTGGTCGCAACTTCTTGAGACACCTGAGAAGGACTCGATTATTAGTCCATGTTGTTGACGCATCTGCTGAGAATCCTGCAGATGATTATAGAACTGTCAAAGAAGAGTTGCGGATGTATAATCCAGATTATCTTGAACGGCCGCATATTGTGGTGTTGAACAAGATTGACCTTCCTGAGGCAAGAGACAGGCTTCCATCTTTGACGGAAGAAATACTGAAAATTGGAACTGATAACAAACTGTCAGAGTCAAAAGTGAGCTCTGCAGATTCAATTCAATTATTCCCGTCAGAAGGTGAAGATGGAGATATTTCTTCTGCGGAGATCCTTAACAAAAATAGGGAGGATAAAGAAATTGAGGACTATCCTCGTCCTCTCTCTGTTGTAGGCGTTAGTGTTCTGAAAGGCATTAAGATAAAAGAGATGTTAAAGGTGATAAGAGCAGCTTTAAAGAATTGCAGAGATTCGAGTGGAACCGAATCTGAATCTGTGAGATCGGTTTCTCCTGCTTCCCCATAG 1536 44.53 MASLLSLQPSTSFLSQDYTLFFSCKFPKRHNRYGSYLKDYIHDTVKCRLSRAKESPSANSSTLIREPHKYFDQAIITVRSGDGGHGAVLNVPNQQASNSPGKHGKEKARKKPLFKRDFDGSLILPVGGHGGDVVIYADEGKDTLLEFHTKGRYNAKRGGNVDTMGGLSSQLRDGLAAPTLRIPVPLGTVIKRKRGKLLGDLAHPGDEILVARGGQGGISLLDMPAQRRKKSMALTINVMRDDSDKVLALGQPGEEVSLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIADYPFTTLMPNLGRLGGDPSLGAGMYQSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVVDASAENPADDYRTVKEELRMYNPDYLERPHIVVLNKIDLPEARDRLPSLTEEILKIGTDNKLSESKVSSADSIQLFPSEGEDGDISSAEILNKNREDKEIEDYPRPLSVVGVSVLKGIKIKEMLKVIRAALKNCRDSSGTESESVRSVSPASP 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13705184 13709259 + Conep04aG0200500.1 Cone4ag1943 436921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1943 511 MobiDBLite consensus disorder prediction 493 511 - -
Cone4ag1943 511 NCBIfam small GTP-binding protein domain 267 422 IPR005225 GO:0005525(InterPro)
Cone4ag1943 511 Gene3D GTP1/OBG domain 69 264 IPR036726 -
Cone4ag1943 511 SUPERFAMILY Obg GTP-binding protein N-terminal domain 70 233 IPR036726 -
Cone4ag1943 511 Gene3D - 265 500 IPR027417 -
Cone4ag1943 511 CDD Obg 266 413 IPR031167 GO:0005525(InterPro)
Cone4ag1943 511 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 52 497 IPR045086 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005739(PANTHER)
Cone4ag1943 511 ProSiteProfiles Obg domain profile. 68 265 IPR006169 -
Cone4ag1943 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 491 IPR027417 -
Cone4ag1943 511 MobiDBLite consensus disorder prediction 492 511 - -
Cone4ag1943 511 PRINTS GTP1/OBG GTP-binding protein family signature 289 307 IPR006073 GO:0005525(InterPro)
Cone4ag1943 511 PRINTS GTP1/OBG GTP-binding protein family signature 341 359 IPR006073 GO:0005525(InterPro)
Cone4ag1943 511 PRINTS GTP1/OBG GTP-binding protein family signature 268 288 IPR006073 GO:0005525(InterPro)
Cone4ag1943 511 PRINTS GTP1/OBG GTP-binding protein family signature 324 339 IPR006073 GO:0005525(InterPro)
Cone4ag1943 511 Pfam GTP1/OBG 127 232 IPR006169 -
Cone4ag1943 511 Pfam 50S ribosome-binding GTPase 267 394 IPR006073 GO:0005525(InterPro)
Cone4ag1943 511 ProSitePatterns GTP1/OBG family signature. 326 339 IPR006074 GO:0005525(InterPro)
Cone4ag1943 511 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 266 490 IPR031167 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1943 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0160 Cone-Chr4:756989 Cone4ag1943 Cone-Chr4:13705184 2.34E-59 dispersed
Cone4ag1943 Cone-Chr4:13705184 Cone5ag1540 Cone-Chr5:10583121 5.33E-14 dispersed
Cone7ag1857 Cone-Chr7:12004412 Cone4ag1943 Cone-Chr4:13705184 2.91E-51 transposed
Cone4ag1943 Cone-Chr4:13705184 Cone7ag1856 Cone-Chr7:12003622 1.46E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31