Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1946 ATGTCTGGGTTCTATCTAGGAGGAGGAAGATCATCATCACCCAACAAGCATGAAGAATTACGAGAGCAACACTTGTTCTTCTACAGATCAACCGAGGCCGAGATCTATAGCAACAACCACAACAACAACACTAACAAGGCCGCAGGTACTTTCGAGATATGGCCACATCATCACTACACCCATCACCAGGATCAAGACAATGTGGAAAACCACCTGTCGTTTGGAGTGGGACCTAGCCGGAGATCAAGCTTCATCAATGTCGTCTCCGACGAGTCCACGTCCAGATCGAGCGGCTTCACTTTGATGCGACCACAAGTAGGTCTAGGAGCATGCGGAGGAGGAGGTATGAACTGTCAAGACTGTGGTAACCAAGCCAAGAAGGATTGTTCTCACTTAAGGTGTAGAACTTGCTGCAAGAGCCGAGGGTTTCAGTGCAACACGCACGTAAAGAGCACGTGGGTTCCGGCCGCTAAACGCCGGGAAAGACAGCAAGCCCTTACCTCGTTACAAAATCAAACGCAACAACAGCAACAACAGGATCAGGATTTTCGCGCCGGAGAAAATACCAAAAGGCTTAGAGAGAATCAAGGAGCAGCTGTGATCTCTCGTTTACCCATGACATCCTCGTCAGGGATGGATCTTTCGCAATTTCCAGCCGAGGTGAACTCTGCGGCAGTTTTCCGGTGTGTGAAAGTGAGCGCTATGGACGATGAAGACGAGCAGTTTGCTTATCAAACGGCTGTTAACATCAGAGGACATGTTTTCAAGGGTATCCTCTACGATCAAGGACCCGAAGGTCGTTACACTACTGGCGGCGAAAGTTCATCTGGCCAAGCTTGTGGAGACGGATCGGCCCAACAACTTAATCTCATAGCAGAAGGGCCCGACACCACCATGACCACCACCGCTGCAGCCACTGCATTGCTTGACCCTAATTCGCTCTATCCAGCTCCACTCAATGCTTACATGGCAGCTGGTATGCAATTCTTCTCACCCTCAAGGTCTTAG 1008 50.0 MSGFYLGGGRSSSPNKHEELREQHLFFYRSTEAEIYSNNHNNNTNKAAGTFEIWPHHHYTHHQDQDNVENHLSFGVGPSRRSSFINVVSDESTSRSSGFTLMRPQVGLGACGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCNTHVKSTWVPAAKRRERQQALTSLQNQTQQQQQQDQDFRAGENTKRLRENQGAAVISRLPMTSSSGMDLSQFPAEVNSAAVFRCVKVSAMDDEDEQFAYQTAVNIRGHVFKGILYDQGPEGRYTTGGESSSGQACGDGSAQQLNLIAEGPDTTMTTTAAATALLDPNSLYPAPLNAYMAAGMQFFSPSRS 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13719543 13720817 - Conep04aG0200800.1 Cone4ag1946 436924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1946 335 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 328 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone4ag1946 335 Pfam Domain of unknown function (DUF702) 115 265 - -
Cone4ag1946 335 NCBIfam LRP1 C-terminal domain 216 264 IPR006511 -
Cone4ag1946 335 NCBIfam putative zinc finger domain, LRP1 type 117 159 IPR006510 -
Cone4ag1946 335 Coils Coil 159 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1946 Cone-Chr4:13719543 Cone5ag1461 Cone-Chr5:9602763 1.11E-39 dispersed
Cone12ag1176 Cone-Chr12:9305353 Cone4ag1946 Cone-Chr4:13719543 2.18E-11 wgd
Cone17ag1376 Cone-Chr17:9557174 Cone4ag1946 Cone-Chr4:13719543 5.23E-85 wgd
Cone20ag0106 Cone-Chr20:478496 Cone4ag1946 Cone-Chr4:13719543 4.69E-88 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone6ag1659 Cone-Chr6:12647671 1.36E-55 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone7ag1860 Cone-Chr7:12025045 1.05E-175 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone8ag1222 Cone-Chr8:10333267 6.33E-33 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone8ag0832 Cone-Chr8:8313349 7.04E-49 wgd
Cone4ag1946 Cone-Chr4:13719543 Cone9ag1584 Cone-Chr9:11367151 1.82E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46073 PF00929 RNase_T 1.00E-09 CL0219 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1946 K27807 - csv:101213154 364.77