Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1948 ATGAAGATCCAGTGTGACGTCTGTGATAAAGACGAGGCCTCAGTTTTCTGCATTGCTGACGAGGCAGCTCTTTGTGATTCCTGCGATCACCGTGTCCACCATGCCAATAAGCTCGCCTCAAAACACCAATGCTTTTCCCTTCTCAACCCTTCTTCTTCCAATCACTTCCCTCTCTGCGATATCTGCCAGGAGAGGCGAGCTTTCTTATTCTGTCGACATGACAGAGCAATTCTATGCAAAGATTGTGATCTTTCTATTCACATGGTTAACGAGCATACTCAGAAGCATGACAGGTTTCTTCTTACTGGAGTCAAGCTCTCTGCTACATCCTCCGTCTATATATCATCTTCTTCCTCTTCAAACATTGTCTTGAATGACGCTGTTCCTAATTCTCATCACTCGATCAAGAGAAGTACTGATATTTCGTCCCATGGCGGAATTACAAATCCATCTTCTTCAACTACCATTAACAAGGGCGGAGAAGACTGCATAGGCAATGAAGCCGGTCGTTCAATCGGGACAAGTACTATATCAGAGTACTTGATAGAGACACTTCCAGGCTGGCATTTTGAAGACGTTCTTGATCTCTCTTCCAATCCTTTCGGCTTCCATAAGAATGTTGAGGACGGCACATCACCTTTTGTGGATAGAGAGGTACAAAGCAGCCCGGGGTCTTTCTCATCAGAAAGTTTGGGGATTTGGGTCCCTCAGGCTCCAACTCCATTATTGTATCCGTTAGAAATGAGCGGGCATATTGCGTTGAAGGAGACAAAGGAGGCTACAAATTATATGAAGACAAAAAGAGATGGAGGAGCTGCAAATGATGGTTTTATGGTTCCACAAGTCAATGAACCATACACAGGCTTCAACTTCAAGAGATCTAGACCCTTTTGTTAG 897 44.37 MKIQCDVCDKDEASVFCIADEAALCDSCDHRVHHANKLASKHQCFSLLNPSSSNHFPLCDICQERRAFLFCRHDRAILCKDCDLSIHMVNEHTQKHDRFLLTGVKLSATSSVYISSSSSSNIVLNDAVPNSHHSIKRSTDISSHGGITNPSSSTTINKGGEDCIGNEAGRSIGTSTISEYLIETLPGWHFEDVLDLSSNPFGFHKNVEDGTSPFVDREVQSSPGSFSSESLGIWVPQAPTPLLYPLEMSGHIALKETKEATNYMKTKRDGGAANDGFMVPQVNEPYTGFNFKRSRPFC 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13737676 13739298 + Conep04aG0201000.1 Cone4ag1948 436926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1948 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 CDD Bbox1_BBX-like 58 101 IPR049808 -
Cone4ag1948 298 FunFam B-box zinc finger protein 21 1 99 - -
Cone4ag1948 298 Pfam B-box zinc finger 57 93 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 CDD Bbox1_BBX-like 5 43 IPR049808 -
Cone4ag1948 298 MobiDBLite consensus disorder prediction 134 160 - -
Cone4ag1948 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 284 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone4ag1948 298 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 MobiDBLite consensus disorder prediction 134 162 - -
Cone4ag1948 298 Gene3D Classic Zinc Finger 1 99 - -
Cone4ag1948 298 SMART bboxneu5 54 101 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1218 Cone-Chr3:30922973 Cone4ag1948 Cone-Chr4:13737676 7.71E-58 dispersed
Cone17ag1378 Cone-Chr17:9569772 Cone4ag1948 Cone-Chr4:13737676 2.39E-87 wgd
Cone20ag0105 Cone-Chr20:463874 Cone4ag1948 Cone-Chr4:13737676 3.97E-85 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone6ag1668 Cone-Chr6:12689471 2.79E-23 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone9ag1590 Cone-Chr9:11408047 4.95E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46075 PF09377 SBDS_C 6.20E-26 CL0437 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1948 - - - 0.0