Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1948 ATGAAGATCCAGTGTGACGTCTGTGATAAAGACGAGGCCTCAGTTTTCTGCATTGCTGACGAGGCAGCTCTTTGTGATTCCTGCGATCACCGTGTCCACCATGCCAATAAGCTCGCCTCAAAACACCAATGCTTTTCCCTTCTCAACCCTTCTTCTTCCAATCACTTCCCTCTCTGCGATATCTGCCAGGAGAGGCGAGCTTTCTTATTCTGTCGACATGACAGAGCAATTCTATGCAAAGATTGTGATCTTTCTATTCACATGGTTAACGAGCATACTCAGAAGCATGACAGGTTTCTTCTTACTGGAGTCAAGCTCTCTGCTACATCCTCCGTCTATATATCATCTTCTTCCTCTTCAAACATTGTCTTGAATGACGCTGTTCCTAATTCTCATCACTCGATCAAGAGAAGTACTGATATTTCGTCCCATGGCGGAATTACAAATCCATCTTCTTCAACTACCATTAACAAGGGCGGAGAAGACTGCATAGGCAATGAAGCCGGTCGTTCAATCGGGACAAGTACTATATCAGAGTACTTGATAGAGACACTTCCAGGCTGGCATTTTGAAGACGTTCTTGATCTCTCTTCCAATCCTTTCGGCTTCCATAAGAATGTTGAGGACGGCACATCACCTTTTGTGGATAGAGAGGTACAAAGCAGCCCGGGGTCTTTCTCATCAGAAAGTTTGGGGATTTGGGTCCCTCAGGCTCCAACTCCATTATTGTATCCGTTAGAAATGAGCGGGCATATTGCGTTGAAGGAGACAAAGGAGGCTACAAATTATATGAAGACAAAAAGAGATGGAGGAGCTGCAAATGATGGTTTTATGGTTCCACAAGTCAATGAACCATACACAGGCTTCAACTTCAAGAGATCTAGACCCTTTTGTTAG 897 44.37 MKIQCDVCDKDEASVFCIADEAALCDSCDHRVHHANKLASKHQCFSLLNPSSSNHFPLCDICQERRAFLFCRHDRAILCKDCDLSIHMVNEHTQKHDRFLLTGVKLSATSSVYISSSSSSNIVLNDAVPNSHHSIKRSTDISSHGGITNPSSSTTINKGGEDCIGNEAGRSIGTSTISEYLIETLPGWHFEDVLDLSSNPFGFHKNVEDGTSPFVDREVQSSPGSFSSESLGIWVPQAPTPLLYPLEMSGHIALKETKEATNYMKTKRDGGAANDGFMVPQVNEPYTGFNFKRSRPFC 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13737676 13739298 + Conep04aG0201000.1 Cone4ag1948 436926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1948 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 CDD Bbox1_BBX-like 58 101 IPR049808 -
Cone4ag1948 298 FunFam B-box zinc finger protein 21 1 99 - -
Cone4ag1948 298 Pfam B-box zinc finger 57 93 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 CDD Bbox1_BBX-like 5 43 IPR049808 -
Cone4ag1948 298 MobiDBLite consensus disorder prediction 134 160 - -
Cone4ag1948 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 284 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone4ag1948 298 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 MobiDBLite consensus disorder prediction 134 162 - -
Cone4ag1948 298 Gene3D Classic Zinc Finger 1 99 - -
Cone4ag1948 298 SMART bboxneu5 54 101 IPR000315 GO:0008270(InterPro)
Cone4ag1948 298 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1948 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1218 Cone-Chr3:30922973 Cone4ag1948 Cone-Chr4:13737676 7.71E-58 dispersed
Cone17ag1378 Cone-Chr17:9569772 Cone4ag1948 Cone-Chr4:13737676 2.39E-87 wgd
Cone20ag0105 Cone-Chr20:463874 Cone4ag1948 Cone-Chr4:13737676 3.97E-85 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone6ag1668 Cone-Chr6:12689471 2.79E-23 wgd
Cone4ag1948 Cone-Chr4:13737676 Cone9ag1590 Cone-Chr9:11408047 4.95E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag0338 . 10 383 C2C2-CO-like Transcription Factor Family AT5G15850 51.8 5.1e-54 209.1
Cone11ag0338 . 1 383 C2C2-CO-like Transcription Factor Family AT3G02380 52.7 1.9e-61 233.8
Cone7ag1644 . 1 323 C2C2-CO-like Transcription Factor Family AT5G24930 55.9 3.1e-67 253.1
Cone4ag1724 . 1 321 C2C2-CO-like Transcription Factor Family AT5G24930 57.1 7.7e-66 248.4
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 57.5 1.2e-93 340.9
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 56.5 1.6e-90 330.5
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone12ag1303 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 54.9 1.8e-86 317.0
Cone8ag1358 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 54.3 2.2e-84 310.1
Cone3ag1218 . 1 213 C2C2-CO-like Transcription Factor Family AT1G75540 50.5 3.3e-47 186.4
Cone6ag1668 . 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 64.4 7.0e-57 217.6
Cone9ag1590 . 10 187 C2C2-CO-like Transcription Factor Family AT2G21320 63.5 9.4e-54 207.2
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT2G21320 77.5 5.9e-40 161.4
Cone6ag1668 . 1 175 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 1.1e-55 213.8
Cone9ag1590 . 10 185 C2C2-CO-like Transcription Factor Family AT4G38960 63.1 2.4e-55 212.6
Cone8ag1235 . 1 95 C2C2-CO-like Transcription Factor Family AT4G38960 76.5 1.3e-40 163.7
Cone3ag1218 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 54.5 8.3e-48 188.0
Cone10ag1103 . 1 118 C2C2-CO-like Transcription Factor Family AT4G39070 76.3 1.1e-47 187.6
Cone4ag1948 . 1 195 C2C2-CO-like Transcription Factor Family AT4G39070 51.7 1.2e-46 184.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46075 PF09377 SBDS_C 6.20E-26 CL0437 Cone TR