Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1951 ATGGAGATAGAACAGAAGAAGATTACGTCCAAGAAACGAACGAGGCCAAGCGAGGTTGGTTTTGATTCAGATGATAACGAGCCCATTGGATCTCTGTTGAAGTTGAAGAAGCCACGAATCCCTAAGAAGACTAATTTGGGTGCAGATGCAGAAGATAGTCGTGAAAGGGGAAATAAGGTTGGGACATCAAAATTGGCGCAAGAAGATGACGATGTTGGAGGAATGGAAGATACCTTGGCTATTTTTAAGAAGAAGTTGAAGGGTCCGAAGAAGTATAAGGGATCTCGAATTATGAGGGAATCGGCTTCTGCTTTGTTTCTGGTCGAGTCTTCGGATCCGTCCTCTAGTGGACCTGTAAAGATTGGAGTTTTAGATGGAAGATCGACATCCAATATTTTGGGGAATGCTCAGGTGCTAGGCCATGACAGATCCGACATATCTTTGGGCATAAGATTAGAAAACAAACTTAAATCAAAAGCGAAGAGACACAAGAATAGTTTGACTTCTAAGGAGATTGACGCTCCTGTTCCTTTCAACGATGGTGCAGGTATGTGTCTTGGGGAGGGTTCTAATCTTTCTCTGAATGAACACTTGGAAGACCCATTATCAGCAGTTTTGAGAAAAAGTGAATCTGGTTTAAATAGGAAATTGCGCAAGTTGGCAAGCTCAAAACAGAAAAGTAAGAGAGAGAATTTGGAGAGTATATCAAGCCCCATATCTGAAGCTGTTACAAGGGTATGTAAGTCTGATACCTTGCATCTAGCTTCTGCTTTATGTCTATTAGGTTCAGGCATAGATGAATATAGGAGAGTGGATATCCGTAGGTTAAATGACAGTTGTCATCAAGCCTCCTGCATTGACGGGAAAGGTAAAAGAACTTGTGGGATTTCGTGTAATCCAGATGATCCATACGGTTCCAATGAACTCCACAATGAAGAAAGGAAGCTGCTTAGTCGTTTACAGTTGAGAGAGAGCTGTTCTGCTCTAAAAGAAATAGGTCAATTAGAAAGTCGAAGTATGAAAGATGGATTAATGCATTGTTCTACAAGCGACACTAGCACTTCCACTAATGGTTTGTCTGATGCATTATCCCAGGAGTCAAAGGATGCTTTGTATCTTGATTGCAATGTTGAATTGCCTAGAGGATTGGTTAAAAGTATGTCCAAAGTGAAACGGGAAACCACCTCTGAGATGGTCCGGGTTGAAGAATTCGGCGATGACTGTGATGGTTTGGATCCTCACATTAATAACCCTGAAATCGCAATGGGTTCTTTGCACAATGATAATGCCTCTGGAAATTCTTCTGATTTGAATAATCAAGAGAAATCTGTAGAAAATCAAATCAAACCTCCAGATGGTGCTTTTGAAGGCATTAGTACTCCAAATCTTGATTCTAAATTTATTGGAAAATTTGCAAATGGTAACTCTCCTGAATTTATAGCTCCAGATGAAAATGAAAGTTACTTGGAGGATGCAGTGTCTGTTCCTGACTGTGAGAAAGATAGTACGCTGTCGGCTATCCAGCGTGCTGTGCGCAAAGCTAAGAAACCTAGGCATCTTGACATGGCCTATGAGGGGGATATTGATTGGAAGATTTTGATAGAGGAGCAATGTTTTCTTGAGGGTCAACGCACTGTAAATAGTCACCGTTCTTATAAATCCAGAAGAGATTCAAATGTTGATACAGAATCTGAAAGTGGTGGGATGGCAGCAGTTTCAGCTGGACTCAAAGCTCATGCAATTGGTCTGTTTGAGAGAATTAAATTTAAGGAGGTCCTAAAGCGCAAAGGCGGGCTTCAGGAGTATTTAGAATGCAGGAATCAGATCCTAGATCTCTGGTGGAAAGATGTTTCTCGGGTTTTGCTTCTCAGTGACTGTGGGGTCACCGAAACTCCCTCAGAGGATGAGCCAGCACGTGATTGCCTTATAAGGGAGATCTATGCATTTCTTGATCGAAGTGGTTATATCAACGTTGGAATTGCATCAGAGAAGGACAAATTGGAACCAAGTGCTGTGCATAATTATAGTCTTCTTGAAGAGAAAAAAGTTGAACATGACTCTGGGGCTTCAGTTGCTGACTCCGAGGATGGTGTTTCCTTCATTGTTGGTCACATTGAATGTTCAGAAGCCTCGATGGAGGCAAAAAGTGCTATTATACTGTCTCGAGAGGAGATCCTGACACTGAAAGCCACCAAAGAAAGTAACCTTACTGCAATTAGTTCAGAGCCTCCAAATGTCAACGAGACTAAAGAAGGCATAGCTGATGAAGACCTGCATAACTGTAGCACTGATAATGAAGTACCAGATATAATGGTCAATTTAGATGTTAGAATTGCTGATCCAAGTTGTGAAAAGTTGGATACTCAAACTGCCCCTGACCTATCTTCTGGCCCCACAAATGGGCATGAGGGAGTGAATTGTCAATATCAATGTGATTCAGAAATGGGAAAGAGAATCATCATTGTAGGAGCTGGTCCTGCTGGTCTAACTGCTGCACGCCACTTACAGCGCCAGGGTTTTACTGTTACTGTGCTTGAAGCTAGGAGCAGGATAGGAGGTCGAGTTCATACCGATCACACATCACTCTCAGTTCCTGTTGATCTTGGTGCAAGTATTATTACAGGTGTTGAGGCTGATGCTACCACTGAAAGGAGACCTGATCCGTCGTCATTGATTTGCGCTCAGCTGGGTCTTGAGTTGACCGTGTTAAACAGTGACTGCCCTCTGTATGATATTGTAACGTGTGGAAAAGTTCCTGCTGATCTGGATGAAGCCTTGGAAGCAGAATTCAATGGCCTTCTTGATGATATGCTATTGCTAGTTGCACAAAGAGGGGAGCATGCTTTGACTATGTCTCTTGAAGAGGGTTTAGAATATGCCCTTAAGCGCCGTAGAATGGCACGATTGGGAATTGATATTGAAAAAATAGAGCTGCACAATTATGCTAATGCTTTATCTAACTGCAAAACTAAACTTGATAGCAGTGATGTTGAGAAAGAGAGTTCCAGGAAGGGGATTTTGAGTCCTTTTGAGAGGAGGGTTATGGATTGGCATTTTGCCAACTTGGAGTATGGTTGTGCTGCTTTGCTTAAAAAGGTGTCGCTTCCATACTGGAACCAAGATGATGTTTATGGAGGCTTTGGAGGACCTCATTGTATGATTAAAGGTGGTTATAGCAGTGTTGTGGAGTCTCTTAGGGAAGGACTTTGGGTCCATTTGAACCATGTAGTAACTGATATTTCCTATGGCACTAACGTCTCAGAAATGCAATCCAGGAAGGTAAAAGTTTCCACCTCAAATGGTAGTGAATTTCTTGGAGATGCTGTGCTGATCACGGTACCTCTTGGGTGCTTGAAAGCAGAAACTATCAGATTTTCCCCTGAGTTACCTCAATGGAAGCAATCTTCTATTAAACAGCTTGGGTTTGGAGTTCTCAACAAGGTTGTTTTGGAATTTCCTGAGGTTTTCTGGGATGACTCTGTTGATTACTTTGGAGCAACTGCAGAGGAGACAAACTGGCGGGGCCAGTGCTTTATGTTCTGGAATGTTAGGAAAACAGTTGGGGCACCTGTTCTAATTGCATTAATAGTTGGTAAGGCAGCTATAGACAGGCAAGATTTACAAGCTTTTGATCATGTAAGCCACGCTTTACAAATCCTTCGTAAACTGTTTGGAGAAGCTTCAGTACCTGATCCAGTTGCATCTGTGGTAACAGATTGGGGCAGGGATCCTTTTAGCTATGGTGCTTACTCCTATGTCGCTGTTGGATCATCTGGAGAAGATTATGATATCATAGGCAGGCCTGTTGAGAATTGTTTGTTCTTTGCTGGGGAGGCTACCTGTAAGGAGCATCCTGACACTGTTGGGGGTGCGATGATGAGCGGGCTTAGGGAGGCTGTGCGGATGATTGATATATTGAGTACTGGATATGATTATACCGCGGAAGTAGAGGCAATGGAGGCTTCTCAGAGACAGTCGGAGTGTGAAAAGGATGAAGATTGGGAGATAGTGAAGAGACTCGAGGCCTTGAAGCTTTCTAGCGTCCACTATAACTCTTTTGATAGAGGGTCCTTACTACAAGACATGTTCTTTAGTGCAAAAACCACTACAGGACGGTTACACTTGGCAAAGGAGTTGTTGAATTTCCCTACTGAAACCTTGAAGTCCTTTGCAGGGACTAAAGAAGGGCTTACTGTGCTCAATTCATGGATACTGGACTCAATGGGAAAGGATGGGACACAACTTTTGCGGCACTGTGTTCGGCTTCTCGTGCTTGTTTCCACTGATTTACTTGCGGTGCGGTTATCAGGCATAGGGAAAACTGTCAAAGAAAAGGTTTGTGTACATACAAGCCGAGATATACGAGCCATAGCAAGTCAGTTGGTTAGTGTTTGGCTCGAAGTATTCCGTAAAGAAAAAGCATCAAATGGTGCAACGAAATTTCCAAGGTCAGCAAGTGCTCTTGAATCATCTAAAAGAAGATCTCTCAAAGATTCTTCCTTTGGGAAGCCTCCTTTGCATGCAAACCATGGTGCTTCAGAAAGTACAAGTGCAGATTTGAAGAAAGTTAATAGCAAATCATATAAACTTGACATGGCTGATGCATCAAAACAAGAGATCAGTTCGTCAAGGTTCAGAGGTTCATCTGGTAGGTTGCATCCAGAAGTGGAAGGTGAGAATGTGGCCATGTCGGAAGAAGAACAAGCTGCCTTCACTGCTGCTGAAGCAGCCGGTGCTGCTGCCCTTGCAGCTGCAGAGGCATATGCATCTTCAGAAGCCAAGTGCAACACCTTGCTGCAGCTACCGAAGATACCATCTTTCCATAAATTTGCCAAAAGAGAGCATTTTGCTCAGATGGATGAGTTTGACCACCGGAAGAAGTGGTCTGGTGGTTTTTTGGGAGAGCAAGATTCTATATCAGAAATAGACTCGAGGAACTGTAGAGTTAGGAATTGGTCTGTTGATTTTTCCGCTACTTGTGTTAATCTTGACAGTTCAAGAGCATCCGTGGATAACCTCTCGCAACGAAGTCATTCTAATGAAATAGCCAACCATTTCAACTTAAGGGAGCACTCAGGAGAAAGTGTGGCTGTAGACTGCAATTTTTATACAAAAGCATGGGTTGATTCAGCTGGTAGTGTGGGGGGACTAAAGGACTCTCATGCTATAGAGAGATGGCAATCTCAAGCAGCTGCTGCTGATAGTAATTTCTCCAGTCCAACTATGCATGTACGGGATGAGGAGGAATCAAACACAACTTCAAAACAAACTTCTTGGAAGTATGATAGACTAGCTAATGAGAGCACAGTTTCACAAGTTACAATGAACAAGGAGTTGGTTAAAGATCATTCTCGAGGAGCAGACAGAATTAAACAGGCGGTTGTAGATTATGTCGCATCGTTGCTTATGCCTCTTTATAAAGCAAGGAAAATTGACAAGGAGGGATACAAGTCAATATTGAAGAAAAGCGCAACCAAGGTTATGGAACAGGCAACGGATGCGGAGAAAGCCATGGCTGTTTCTCAGTTTCTTGATTATAAGCGCAAGAACAAGATTCGTTCCTTTGTGGATAAATTAATAGAGAGGCACATGGCACTGAAGCCAGTAATTAAATAA 5616 42.75 MEIEQKKITSKKRTRPSEVGFDSDDNEPIGSLLKLKKPRIPKKTNLGADAEDSRERGNKVGTSKLAQEDDDVGGMEDTLAIFKKKLKGPKKYKGSRIMRESASALFLVESSDPSSSGPVKIGVLDGRSTSNILGNAQVLGHDRSDISLGIRLENKLKSKAKRHKNSLTSKEIDAPVPFNDGAGMCLGEGSNLSLNEHLEDPLSAVLRKSESGLNRKLRKLASSKQKSKRENLESISSPISEAVTRVCKSDTLHLASALCLLGSGIDEYRRVDIRRLNDSCHQASCIDGKGKRTCGISCNPDDPYGSNELHNEERKLLSRLQLRESCSALKEIGQLESRSMKDGLMHCSTSDTSTSTNGLSDALSQESKDALYLDCNVELPRGLVKSMSKVKRETTSEMVRVEEFGDDCDGLDPHINNPEIAMGSLHNDNASGNSSDLNNQEKSVENQIKPPDGAFEGISTPNLDSKFIGKFANGNSPEFIAPDENESYLEDAVSVPDCEKDSTLSAIQRAVRKAKKPRHLDMAYEGDIDWKILIEEQCFLEGQRTVNSHRSYKSRRDSNVDTESESGGMAAVSAGLKAHAIGLFERIKFKEVLKRKGGLQEYLECRNQILDLWWKDVSRVLLLSDCGVTETPSEDEPARDCLIREIYAFLDRSGYINVGIASEKDKLEPSAVHNYSLLEEKKVEHDSGASVADSEDGVSFIVGHIECSEASMEAKSAIILSREEILTLKATKESNLTAISSEPPNVNETKEGIADEDLHNCSTDNEVPDIMVNLDVRIADPSCEKLDTQTAPDLSSGPTNGHEGVNCQYQCDSEMGKRIIIVGAGPAGLTAARHLQRQGFTVTVLEARSRIGGRVHTDHTSLSVPVDLGASIITGVEADATTERRPDPSSLICAQLGLELTVLNSDCPLYDIVTCGKVPADLDEALEAEFNGLLDDMLLLVAQRGEHALTMSLEEGLEYALKRRRMARLGIDIEKIELHNYANALSNCKTKLDSSDVEKESSRKGILSPFERRVMDWHFANLEYGCAALLKKVSLPYWNQDDVYGGFGGPHCMIKGGYSSVVESLREGLWVHLNHVVTDISYGTNVSEMQSRKVKVSTSNGSEFLGDAVLITVPLGCLKAETIRFSPELPQWKQSSIKQLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETNWRGQCFMFWNVRKTVGAPVLIALIVGKAAIDRQDLQAFDHVSHALQILRKLFGEASVPDPVASVVTDWGRDPFSYGAYSYVAVGSSGEDYDIIGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSTGYDYTAEVEAMEASQRQSECEKDEDWEIVKRLEALKLSSVHYNSFDRGSLLQDMFFSAKTTTGRLHLAKELLNFPTETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRKEKASNGATKFPRSASALESSKRRSLKDSSFGKPPLHANHGASESTSADLKKVNSKSYKLDMADASKQEISSSRFRGSSGRLHPEVEGENVAMSEEEQAAFTAAEAAGAAALAAAEAYASSEAKCNTLLQLPKIPSFHKFAKREHFAQMDEFDHRKKWSGGFLGEQDSISEIDSRNCRVRNWSVDFSATCVNLDSSRASVDNLSQRSHSNEIANHFNLREHSGESVAVDCNFYTKAWVDSAGSVGGLKDSHAIERWQSQAAAADSNFSSPTMHVRDEEESNTTSKQTSWKYDRLANESTVSQVTMNKELVKDHSRGADRIKQAVVDYVASLLMPLYKARKIDKEGYKSILKKSATKVMEQATDAEKAMAVSQFLDYKRKNKIRSFVDKLIERHMALKPVIK 1871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13750268 13758190 - Conep04aG0201300.1 Cone4ag1951 436929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 418 452 - -
Cone4ag1951 1871 SUPERFAMILY FAD/NAD(P)-binding domain 815 1305 IPR036188 -
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 422 446 - -
Cone4ag1951 1871 Pfam Flavin containing amine oxidoreductase 827 1303 IPR002937 GO:0016491(InterPro)
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 1 70 - -
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 42 70 - -
Cone4ag1951 1871 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1393 1479 IPR035441 -
Cone4ag1951 1871 Gene3D - 567 670 IPR036388 -
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 1734 1758 - -
Cone4ag1951 1871 PANTHER FLAVIN MONOAMINE OXIDASE 793 1305 IPR050281 GO:0016491(PANTHER)
Cone4ag1951 1871 PRINTS Adrenodoxin reductase family signature 841 854 - -
Cone4ag1951 1871 PRINTS Adrenodoxin reductase family signature 818 840 - -
Cone4ag1951 1871 Pfam SWIRM domain 581 657 IPR007526 GO:0005515(InterPro)
Cone4ag1951 1871 ProSiteProfiles SWIRM domain profile. 567 667 IPR007526 GO:0005515(InterPro)
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 1480 1520 - -
Cone4ag1951 1871 SUPERFAMILY Homeodomain-like 569 663 IPR009057 -
Cone4ag1951 1871 Gene3D - 813 897 IPR036188 -
Cone4ag1951 1871 MobiDBLite consensus disorder prediction 1 22 - -
Cone4ag1951 1871 SUPERFAMILY FAD-linked reductases, C-terminal domain 1141 1252 - -
Cone4ag1951 1871 Gene3D - 1001 1258 - -
Cone4ag1951 1871 Gene3D - 1042 1301 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1951 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1951 Cone-Chr4:13750268 Cone9ag0142 Cone-Chr9:613544 4.49E-87 dispersed
Cone4ag1951 Cone-Chr4:13750268 Cone7ag1863 Cone-Chr7:12039205 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46076 PF03109 ABC1 9.30E-34 CL0016 Cone TR