Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1959 ATGAAGTTGCTCAAAGAAATGCAGGATCACTCTGTTATTCGGAAGGCTATGAATTCAGAGTTATGGCACACCTGTGCTGGCCCTCTCGTTTCCCTGCCTCAAGCTGGCACTCTTGTTTATTACTTTCCACAAGGACATAGCGAACAGGTGGCAATTTCCACTAAAAGAACAGCAACCACACAGATTCCAAACTATCCGAATCTTCATTCTCAGCTCCTGTGCCAAGTCCAAAATGTTACTCTCCATGCTGATAAGGATACAGATGAAATCTATGCACAAATGAGTCTCCAGCCAGTGAATTCTGAAAATGATGTGTTAAGATTACCTGACTTTGGACAAAGGGCTAGTAAACATCCGACCGATTTCTTCTGCAAAACTTTGACTGCAAGTGATACTAGTACTCATGGTGGATTCTCTGTTCCACGCAGGGCAGCCGAAAAACTGTTTCCTCTCTTGGATTATGCAATGCAACCACCTACCCAAGAATTAGTAGTCCGTGATTTGCATGACAACACCTGGACTTTTCGCCACATATATCGCGGGCAGCCAAAAAGGCACCTTCTGACAACTGGATGGAGTCTATTTGTTGGTGCAAAACGTCTTAGGGCTGGTGATTCTGTTCTTTTTATCAGGGATGAGAAGTCACAATTACTGGTTGGAGTGAGGCGTGCTAACCGTCAACAAACAACGCTACCATCGTCAGTTCTTTCTGCAGATAGTATGCATATTGGCGTTCTTGCTGCTGCTGCCCATGCTGCAGCAAATAGGAGCCCATTCACCATCTTCTACAATCCAAGGGCATGTCCTTCAGAGTTTGTGATTCCTTTAATGAAATACCGAAATTCAGTATATGGGACCCGACCTTCTGTAGGGATGAGGTTTGGAATGATGTTTGAAACAGAGGAATCTGGTAAACGCAGATACATGGGAACCGTTGTTGGAATTAGTGACTTAGATCCACTCAGATGGCCTGGTTCCAAGTGGCGAAATCTGCAGGTAGAGTGGGATGAACCAGGATGTTGTGATAAACAAAACAGGGTTAGCTCATGGGACATTGAAACTCCGGAAAGTCTTTTCATTTTTCCTCCTTTGACTTCTGGTCTTAAACGACCATTCCAATCTGGATTCTTAGGAGGAGAAACTGACTGGGTTAGTTTGATAAAAAGGCCACTTGTTCGGATCCCTGAAAATGGACATGCCGATCTTCCACGCTCTGTTTCTAGTCTATGTTCTGAACAAATGATGAAGATGCTAATGAAACCTCAACTTGTTAACCACCATGTACCTGCTGCCTTACATCAGGAAACCATTTCTAAGGTAGTATATAAGTTAGGTGAGCCACAAAATGTGAAGATCTTACAGCCTGCAATCAATCAAAAGCCTCAGTTGATATCTTCAGAAATGACATCATCTATGCAAGATCAAAACCTTCCTAGTTCCCTTCCCAATCAATCTGCTGCTACAGATTCCAACAACTTATCATTAATAGCAACCTCACTCAGAAGATCAAACTCTTTCATTATCCCTCTTGAAAGCCAATCACTATCTGGAGCCATCAATGAGAACTCGAAATTCGAATCCGAGATTTCTTCGGATCCATTAAGCCATATGACCCCAGCTGGAGATTTCAGCGAGGAAAAACTGAACTCTGCAAATGTAAATCTACATAGTCTTGTTAACCAGCTTTCATTCCTTAATCAGAACCAAATTCTCTTGCCAATGCAAGAAAATCCATGGCCTATCATTCAACCTCAGCTTGAATCATTGTTTCACCCGACCCAATCAATTGACATGCCTCAATCAGATTTCAAAAACCCCAGTGGATTACTTCCAACCCTAGATGCAGATCATGGTGGTATATATAACACTTTAGGAGTACATCCAGACACAGTTAATTTCCCAATGGCTGCTTCAACTAATCCTGAAATATGGGATCCTGTTAACAGTTTAGGGTTCTTCTCTGAAGGAAACCAGCACACTTCTTTCTCCCATCAAGATCCATCATCTAACAACCTTAATTGTAATATAGCTAATTTGAATGATCAGAGAGACTTGTCAGATGAGAGCAATAACAATAATCAAAGTGGGATTTGCTCGTGCCCTAATATGGGTCTAAGTAATGGTGGTGGGAGTAGTGTGGTTGATCCATCTGATTCAAGCGCCATTTTGGATGAATATTGCACGTTAAAAGCTGTTGATTTTCAGAATCTACCTGATTACCTGGTGGGAAACTTCAGTTCAAGCCAGGATGTTCAGTCTCAGATTACTTGTGTGAGTCTAGGAGATTCACAGGCTTTTACTCGGCAAGATTTTGGAGACAACTCCAATGGAACAAGTTCGAGCAATGCTGAATTTGATGAGAGCAGCCTTTTGCAGAGTAGCTCTTGGAAGCAGCAAGTAGTTCCCCCACCTATGAGAACTTATACAAAGGTTCAGAAGGCAGGATCTGTTGGGAGATCAATTGATGTGACGAGTTTCAAGAACTACGATCAATTATGCTCTGCAATTGAATGCATGTTTGGTCTCGAGGGGTTGCTCAATGACCCGAGAGGTTCGGAATGGAAACTGGTCTATGTGGATTATGAAAATGATGTTCTACTTGTTGGAGATGACCCTTGGGAGGAATTTGTGGGTTGTGTCCGATGCATTAGGATTTTATCACCGTCAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGAATCAATTGCTCTGCCACAGAAGTTGGCCGTGACTGA 2763 42.6 MKLLKEMQDHSVIRKAMNSELWHTCAGPLVSLPQAGTLVYYFPQGHSEQVAISTKRTATTQIPNYPNLHSQLLCQVQNVTLHADKDTDEIYAQMSLQPVNSENDVLRLPDFGQRASKHPTDFFCKTLTASDTSTHGGFSVPRRAAEKLFPLLDYAMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLMKYRNSVYGTRPSVGMRFGMMFETEESGKRRYMGTVVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWDIETPESLFIFPPLTSGLKRPFQSGFLGGETDWVSLIKRPLVRIPENGHADLPRSVSSLCSEQMMKMLMKPQLVNHHVPAALHQETISKVVYKLGEPQNVKILQPAINQKPQLISSEMTSSMQDQNLPSSLPNQSAATDSNNLSLIATSLRRSNSFIIPLESQSLSGAINENSKFESEISSDPLSHMTPAGDFSEEKLNSANVNLHSLVNQLSFLNQNQILLPMQENPWPIIQPQLESLFHPTQSIDMPQSDFKNPSGLLPTLDADHGGIYNTLGVHPDTVNFPMAASTNPEIWDPVNSLGFFSEGNQHTSFSHQDPSSNNLNCNIANLNDQRDLSDESNNNNQSGICSCPNMGLSNGGGSSVVDPSDSSAILDEYCTLKAVDFQNLPDYLVGNFSSSQDVQSQITCVSLGDSQAFTRQDFGDNSNGTSSSNAEFDESSLLQSSSWKQQVVPPPMRTYTKVQKAGSVGRSIDVTSFKNYDQLCSAIECMFGLEGLLNDPRGSEWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGINCSATEVGRD 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13780687 13787120 - Conep04aG0202100.1 Cone4ag1959 436937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1959 920 FunFam Auxin response factor 121 225 - -
Cone4ag1959 920 Gene3D - 121 224 IPR015300 -
Cone4ag1959 920 SUPERFAMILY CAD & PB1 domains 819 885 - -
Cone4ag1959 920 Pfam AUX/IAA family 799 894 IPR033389 -
Cone4ag1959 920 Pfam B3 DNA binding domain 123 224 IPR003340 GO:0003677(InterPro)
Cone4ag1959 920 MobiDBLite consensus disorder prediction 768 798 - -
Cone4ag1959 920 Coils Coil 548 568 - -
Cone4ag1959 920 CDD B3_DNA 122 223 IPR003340 GO:0003677(InterPro)
Cone4ag1959 920 Gene3D - 288 359 - -
Cone4ag1959 920 Pfam Auxin response factor 249 332 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone4ag1959 920 SUPERFAMILY DNA-binding pseudobarrel domain 109 252 IPR015300 -
Cone4ag1959 920 SMART B3_2 123 225 IPR003340 GO:0003677(InterPro)
Cone4ag1959 920 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677(InterPro)
Cone4ag1959 920 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 898 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone4ag1959 920 Gene3D - 803 895 - -
Cone4ag1959 920 MobiDBLite consensus disorder prediction 467 486 - -
Cone4ag1959 920 ProSiteProfiles PB1 domain profile. 806 890 IPR053793 -
Cone4ag1959 920 FunFam Auxin response factor 802 895 - -
Cone4ag1959 920 FunFam Auxin response factor 287 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1959 Cone-Chr4:13780687 Cone7ag1874 Cone-Chr7:12073372 0 dispersed
Cone4ag1959 Cone-Chr4:13780687 Cone16ag0327 Cone-Chr16:4148175 2.07E-200 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46078 PF02847 MA3 1.30E-21 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1959 K14486 - csv:101216825 1234.17