Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1961 ATGGAGGGATTGAACGTTTCAGATACCGATTTAGTAGTCTACCTCCACCCATCGAAGAGTAAAGGAGTTTCTCAAGCTGTTCTTCGCGAGCTCAGCACTCTGCTATTCAAGTTCAATGAAAGTTTCGATGGTGTAGTACTAGCTTACGATGTGCAAATTACTGATAAATATGGAAAGTTTCGTCCTGTGATTCATCCTTATTTTGGTGTGAGACTAACGGCAAAGCTTTTACTTTTCTCTCCAAAACCGAATATGCTGTTAGAGGGGAAGGTGGTGAAGCTCAAGCAGGAATCCATCCATGTCATTGTTCTGGGTTTCGCTTCTGCAATCATTACTGAAGAAGACATTCGTGATGAATTCAAATTCAAAATTAAACGTGGTGGGGAAGTATTTGTCAGCAGATCTCACAAACAGCACGCGATAAAGATTGGAGCCACAATACGCTTTTTAGTAAAGAGTTTTGACGAGGAAATACTTCACATTGGCGGATCTTTAGCTCCATCTAATACAGGAGAGGTCTGTTGGTTGGAGAAGAATTTGACAGATGTTCCATTTATCGACAGGGGTGGCAAGCGAAGTAGAGATAATGAGGGGGAGTCAAGATTGCAAGATGATGTTGAAATTACTGGTGAGCAATCATTTTTCTTGAACGATAACCAGCAAGCGAAGAAGTCCAGGAAACTGAGAATCAGCTAA 696 41.38 MEGLNVSDTDLVVYLHPSKSKGVSQAVLRELSTLLFKFNESFDGVVLAYDVQITDKYGKFRPVIHPYFGVRLTAKLLLFSPKPNMLLEGKVVKLKQESIHVIVLGFASAIITEEDIRDEFKFKIKRGGEVFVSRSHKQHAIKIGATIRFLVKSFDEEILHIGGSLAPSNTGEVCWLEKNLTDVPFIDRGGKRSRDNEGESRLQDDVEITGEQSFFLNDNQQAKKSRKLRIS 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13790892 13792867 + Conep04aG0202300.1 Cone4ag1961 436939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1961 231 FunFam DNA-directed RNA polymerase 2 83 - -
Cone4ag1961 231 Gene3D - 3 83 IPR036898 -
Cone4ag1961 231 Gene3D - 86 229 - -
Cone4ag1961 231 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 9 181 IPR045113 GO:0005736(PANTHER)|GO:0006352(InterPro)
Cone4ag1961 231 FunFam DNA-directed RNA polymerase 86 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1961 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0587 Cone-Chr17:3095079 Cone4ag1961 Cone-Chr4:13790892 3.24E-98 dispersed
Cone20ag0822 Cone-Chr20:5823569 Cone4ag1961 Cone-Chr4:13790892 1.32E-132 dispersed
Cone4ag1961 Cone-Chr4:13790892 Cone7ag1875 Cone-Chr7:12080515 3.28E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1080 . . . . . . . . . . Cma01g01960 Cma09g00116 Car01g01532 . . Cpe06g00078 . . . . . . . . . . . . . . . Cone4ag1961 Cone7ag1875 . . Lsi04g01727 Csa03g04264 Chy04g00432 . . . . . . . . . . Cmo01g02019 Cmo09g00114 . . . Car09g00104 . Cpe02g00082 Bhi09g02105 . . . Hepe01g1630 Mch11g0133 . Cla05g01889 Cam05g2022 Cec05g2033 Cco05g2089 Clacu05g2013 Cmu05g1894 Cre05g2019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003168 1 6 1 1 1 1 2 2 2 1 2 2 2 0 1 2 2 4 2 2 1 1 2 1 1 2 1 2 1 1 50