Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1968 ATGGCTAAATCATTAACTTCATCAGCTGGTCAACCGGCCGCCGCAAGCTCAGATCGAAAGGAGAAGGAAAAACGTCATTCCAAACGGAAATCCAACAAGCATGAGCACCAGGTCAAACCAGCTTCCTCATGGGACCAAATCAAAAACCTGCTAACCTGCAAGCAGGTTGAAGCAGGGACACATGTCCACGACCCATCAAAAAACAAACCTGCCGGTTATTCAAAGCTCGGGTCATCTTGTAGCTCTATATGCAGCTTCAAAGACGCGGCTCATGGCAACACTAGTAGGGTGGTCCATAGAGCCGACAACTCTCCTGAGGGCAGCTTATTGGCCGGCCAAGAAGCCAGGTTACTCAGTAGCAGGACTCGTCGGAAAGGTGCAAATGGATCCTCCTCCGGGTCTGTATCCGGTTCGACAAGATCCAATAACTTCGCCGCGAGTACAGCTAATTCCTACTCGTCATCTTCTAGGGGAATCCAATTCAGGAAGCTCTATGGCTGTTACGAATGTCAGACAGTCGTCGACCTTAGCAGGTACCAAATTCCGAGGTCTACCATTTTTTCATGTCCTCAATGTGGAGAGATCTTCCCCAAGATCGAAAGTTTGGAACTTCACCAAGCACTACGCCATGCCGTATCGGAGCTGGGCCCAGAAGATTCCGGCCGCAACATCGTGGAGATTATCTTCAAATCTAGTTGGCTTAAGAAAGATAATCCGATCTGTAGCATCGAACGGATATTAAAAGTCCACAACACCCAGCGCACCATCCAACGGTTCGAGGACTGCAGGGATGCGGTCAAAACCCGGGCGCTCAACAGCACCAGAAAAAATCCCAGATGTGCGGCGGATGGTAACGAACTCCTGCGATTTCACTGCACCACCGTAACGTGCGCGCTCGGCTCAAGTGGCTCGTCCAGCTTATGCGGCTCAGTTCCCGGCTGCGGCGTCTGCACTATTATCCGGCACGGGTTCCAGGGCAAGAGTGCTGCTGACGGTGCCGGGGAGAGCGGGAAAGCTGGTGTTCTGACAACCACGAGTAGTGGTAGGGCCCACGACTCGCTAATATGTACGGACGGGCGTAGGGCCATGCTGGTCTGCCGTGTGATAGCAGGGAGGTTGAAACGCATTGCGGAAGACGCGCAGCCAGAGGAAGAGAGATGCATGGGCGGCGCATATGATTCAGTGTCCGGCTACGCGGGGATCTACTCCAATCTGGAGGAGTTGGTAGTTTTCAATCCAAGGGCTATTCTACCTTGTTTTGTAGTCATTTACAAGGCTTTAGAATCATAA 1290 52.02 MAKSLTSSAGQPAAASSDRKEKEKRHSKRKSNKHEHQVKPASSWDQIKNLLTCKQVEAGTHVHDPSKNKPAGYSKLGSSCSSICSFKDAAHGNTSRVVHRADNSPEGSLLAGQEARLLSSRTRRKGANGSSSGSVSGSTRSNNFAASTANSYSSSSRGIQFRKLYGCYECQTVVDLSRYQIPRSTIFSCPQCGEIFPKIESLELHQALRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICSIERILKVHNTQRTIQRFEDCRDAVKTRALNSTRKNPRCAADGNELLRFHCTTVTCALGSSGSSSLCGSVPGCGVCTIIRHGFQGKSAADGAGESGKAGVLTTTSSGRAHDSLICTDGRRAMLVCRVIAGRLKRIAEDAQPEEERCMGGAYDSVSGYAGIYSNLEELVVFNPRAILPCFVVIYKALES 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13835607 13837535 + Conep04aG0203000.1 Cone4ag1968 436946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1968 429 MobiDBLite consensus disorder prediction 123 140 - -
Cone4ag1968 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 42 425 - -
Cone4ag1968 429 SUPERFAMILY ADP-ribosylation 212 425 - -
Cone4ag1968 429 Gene3D - 211 426 - -
Cone4ag1968 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 187 215 IPR013087 -
Cone4ag1968 429 MobiDBLite consensus disorder prediction 118 140 - -
Cone4ag1968 429 ProSitePatterns Zinc finger C2H2 type domain signature. 189 210 IPR013087 -
Cone4ag1968 429 FunFam C2H2-like zinc finger protein 211 425 - -
Cone4ag1968 429 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1266 Cone-Chr17:9127782 Cone4ag1968 Cone-Chr4:13835607 2.97E-92 dispersed
Cone4ag1379 Cone-Chr4:11178786 Cone4ag1968 Cone-Chr4:13835607 6.46E-92 dispersed
Cone4ag1968 Cone-Chr4:13835607 Cone7ag1552 Cone-Chr7:10684926 3.20E-92 dispersed
Cone17ag1400 Cone-Chr17:9660835 Cone4ag1968 Cone-Chr4:13835607 1.62E-171 wgd
Cone4ag1968 Cone-Chr4:13835607 Cone7ag1881 Cone-Chr7:12127236 2.19E-275 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46079 PF00076 RRM_1 6.30E-18 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1968 - - - 0.0