Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1974 ATGGCTGGAAACTATAGATTTGCCCTGGACCAAAAGGATATTGTTAGGTTATTAGTGACCACCATTGATGGTTTCATACGAGACCGTTTAATCAATAAAGAACAGAGAACACAGGACAAAGAACAGTGTGCAGGGAGACTCGCAGCTGAAGATGGAAGCTCGGACAAGGAATCGGTAGTTAGGTACTCTGATCAAGCTGTATTAGCAAACTTGGATTGGGGTATTGAAGCACTGGAGGAAGCTATTAATACATCCAATATAGAAACTAAGCTTGCACGATTAGACCATTCGGAGAAGATGCTACAAGTGTGTGCATTGTTGAATTCAAATGACAAAACTGCTGGTGTTCCCAATTTCTACCTCTCTGCATGGGCCCATCTCAATCTCTCATACTTATGGAAATTGCGGGGAAATGTTCATCACTCGGTTCTTCATGTTATTGAGATGTTTATTATCGACCCTTTCTTTTCGAGGATTGATTTTGCTCCTGAAATTTGGAAAGAACTTTTTCTACCACACATGGCATCTGTTGTGGGATGGTATTCGGAGGTGAGGCATAGGCTTGTGATGGAAGTAATACCCGATTCATCTGATTTATCTTTCACAGCTGATTTAGACCAATTCTTTAATGAGTCTTTGATCTTCTCGATGAGTCCAGATCAAGTGGAGAGACTGCAAAATCTGGAGCAGCTTTATGGAGCATCATTGGATGAGAACACCAGGCTTTATGCTAAATACTTCAAGGATTGCATGAACGTTCCCGATTCACCTTCTACAAAGAAGATTATTCCGATGTTGCCAATTGCAGAGCCACCGATGACTCCTCTTCATGAAGTGAGCCGCTCGATTCCTGATTATGTGAAATTCGGACCTATATTGCCAAAAAGTGCTGGATTTTCTCCAGTTCTAAAATCCAAAGATGGTGCAAAAGAAGCAAGCAGAGTGAAAGCAATTTCTGCTCTGCCACGGAATGCCGACAATTTTACTGGGTGGGATTCTAAGGATCAGGATGATTCAGATTATGAGCCTAGTGATTCTTGCGCGGATGTATCACCTAGCAGCATGAGGATAATGGGGGAAGAGGATGCTGGGTCTCAAGTAGAGATTCCTAAAATCAAGAATCGTGTACTTTCCCCCCAAATATTTTCTCCAACGGATTCCCCTTCAACTCCTTCACCAAAGAATTTGTCCCCGAAACCAGACATGGAGGTAAAGAAAATTCACAGGAAAAATTATGATCGATCTCGAAGTATGAGCTATGAAGATTTGAATAGCCAACTTTTGGAGAATTGTTCACCCAGAGAACAAGAGGGAAGCCAGAGCCAGAGTTCACTGTCATTGTCTGAGAACCTGGATCATCAGTCACGACCACCTAAGGATTTTGTCTGTCCTATAACAGGCCAGCTTTTTAGTGACCCTGTTACCCTTGAAACAGGCCAGACTTATGAAAGAAAAGCGATTCAGGAATGGCTGAAAAGAGGAAACACAAGTTGCCCCATTACACGGCAGCCTTTAGCCTCAAACATGTTGCCTAAAACAAACTATGTCTTGAAGAGACTCATATCATCTTGGAAAGAACAGCATCCTGATTTTGTTCAGGATTGTTCAAACGCTGGAACACCTATAAATTCATTTGGTTCTCCTGGTACAAAAGAAAGCCCTTCGGACTGCACTCCTCATAGATTATATGGTCTCTCAATTCTTAACAACACATATAAGCATGTTCACCAAAGACGCAAAAGATTCACACAGGCAGCTGTTTTAACATCGCCAACCAGTGTAATATCTCAAGCCACAGCTGAAACAATTATTAATGGATTGAAACCTCTTGTGTCATGTCTTTGTACTTCACAAAACCTGCAAGAATGTGAAACAGCTGTGTTAGCAATAGCGAGAGCATGGAAGGACTCCAAGGCTGATCCAGGGGTTAGATCTTATTTATCGGAACCACCGATTGTAAATGGCTTTGTAGAAATACTCTCAGCTTCCATGGATAGAGAAGTGCTCAGAACAACATTATTTATTCTCTCTGAGCTAATATTTGCAGATGAAAATGTTGGAGAGTTTCTTACCAGTGAAGATTCTGATTTTGATTGCCTGGCTGCTCTGCTAAAGAATGGTCTAGCAGAGGCTGCTATTCTTCTATGCCAGATGAAGCCTGTGTTTGCTCAGCTTTCAGATCATGACCTCATACCATCTCTTGTCCAAATAATTCTTAACAAAAATGAAGATTCAGATGATCTACAATTTGTAATGGAACCAAAGGATGCTGCTATTGCAATGCTTGAGCAGATTTTAATTGGAGGAGATGAAAACAGCAGGTCCCTTAATGCTTTAGGAGTTATTTCTGCAAGTGGGATTCCTGCTTTGCTCAAGTGTTTGAATGGGGTTGATTTAAGGAGGTCCATTGTATCCATACTCCTATGTTGTATGCAGGCTGAAAGAAGTTGCAGGAACCTAATAGCAAATGGAGTTGAACTAACCCCTGTTCTCGAGTTATTTCATGCTGGAAATGATAGTGAAAGAGGCATCTGTGTACATTTCCTTTCGGAGCTGGTCCTGCTGAACAGGAGGACATTATGCAACCAGATCTTGCAGATAATCAAAGATGAAGGTGCCTTCAGCACCATGCATACGCTTCTTGTTTATCTGCAAATGGCTCCAATGGAGCAGCAACCTGCAATCGCTTCTCTTCTTCTGCAGCTTGATCTCCTGACTGAGCCTAGGAAGATGAGCATCTACCGGGAAGAAGCTATAGATTCTCTAATCGAATCTCTTCGGAGAAGGGACTTCTCTAGTTCCCAGTCAATAGCTTTGGATGCATTGTTGTCTCTCACTGGGCGCTTGACATCTTCTGGAAAGTCCTACACTGAAGCCTGGTTACTCAAGATTGCAGGGTTTGATCAACCGTACAATGCTTTGATGAAAGCAGAAAGAAAAAGGAAACTCGATGATGAGTTAACGGAGACCATGGAAGAGGAAGAAAAAGCCACCAGAGCCTGGGAGAAAAGGGTAGCATTAGTGTTTTGCAGCCATGAAAAGGGCTCTATATTCAAAATCTTGGAGGAGTGTCTAAAGAGTAATTCTGTAGAGATAGCGAAGTCTTGCCTTATCATTGTTACATGGCTTTGCCACATGCTTTCTTCCCTTCCAGATACTGGCGTACGTGATATTGCTCGGAAGTCCTTTCTTGATGAATTTATTAATGTTCTCCAATCATCCTGTAACCTTGAGGAGAAGATTTTGGCAGGCCTTGCTCTCAAAACTTTTATTAGCGATCAAGCTGCACTTGAAGAAATGGGAAAACACGCAAAATGCATTTGTAAGACCTTGAGAAAGCTTAAGAGAAACTCAGTGGTGGCTGGCGAAATCACGAAAGCCTTGATGAACTTGTCATCTGTCAATGCAACAGAGCTCTGGAATTATACTGAAGTAGCGGAATTAGATTCAGGCATAAATGGAGAAGTTTTGTCCTTGATCCATCTTAACAGTCGTCTTTTAAGCAGTCATTCTGACGGAACAATAAAGCTTTGGGATGCTGGGAAGAAAGTATTGAGGTTGATTCAAGATGTAAATAAACACACAAAAGCTGTGACGTGCCTCCGTCTTTCATCTTCTGGTGACATATTATACAGTGGTTCCTTAGACAGAACAATTCGGGTATGGACTGTCAAACCCGATGAAATTCAGTGCATTCAAGTACATGATGTAAAAGAGGCAGTATACGAGTTGACAGCCAATGTTAATGTGGCATGCTTTGTTTCTCATGGAACCGGTGTCAACGTGTATAGCTGGTCTGGGGCCCCCAAGCATATAAATTTCAACAAGTATGTTAAGTGCTTAGCCCTGTCAGATGATAAACTATACTGCGGTTGCTCTGGTGATAGTATTCAGGAGGTGGATTTGTCTAAACACACATCAAACACATTCTATGCTGGTATTAGAAAATTGTTGTGGAAACAAACTATCTACTCACTGCATATTCACGATGGCCTTCTATTTTCCGGCGGCTCTTCCGTTGATGCAACAGCTGGAAGGATATTCTCGATCTCAACCAAGGCAGTAGTAGGATCGTTCTCAATCGGGCTAGACATCCATCGAATAGCAGTGAATAGTGATTTTATATTTACAGCAACCAAATGTGGTGTCATAGAAGTTTGGTTGAAAGAAAAATACACCAAGATAGCTTCAATCAAAACGGGTAGTGGAGGAAATGCAAAGATTACGTCTTTGGCAACGGACGTAGATGGAGGGATGCTTTTTGCTGGTACATCTGATTCGAAAATTCAGGTTTGGGCTCTGGATTAG 4308 41.88 MAGNYRFALDQKDIVRLLVTTIDGFIRDRLINKEQRTQDKEQCAGRLAAEDGSSDKESVVRYSDQAVLANLDWGIEALEEAINTSNIETKLARLDHSEKMLQVCALLNSNDKTAGVPNFYLSAWAHLNLSYLWKLRGNVHHSVLHVIEMFIIDPFFSRIDFAPEIWKELFLPHMASVVGWYSEVRHRLVMEVIPDSSDLSFTADLDQFFNESLIFSMSPDQVERLQNLEQLYGASLDENTRLYAKYFKDCMNVPDSPSTKKIIPMLPIAEPPMTPLHEVSRSIPDYVKFGPILPKSAGFSPVLKSKDGAKEASRVKAISALPRNADNFTGWDSKDQDDSDYEPSDSCADVSPSSMRIMGEEDAGSQVEIPKIKNRVLSPQIFSPTDSPSTPSPKNLSPKPDMEVKKIHRKNYDRSRSMSYEDLNSQLLENCSPREQEGSQSQSSLSLSENLDHQSRPPKDFVCPITGQLFSDPVTLETGQTYERKAIQEWLKRGNTSCPITRQPLASNMLPKTNYVLKRLISSWKEQHPDFVQDCSNAGTPINSFGSPGTKESPSDCTPHRLYGLSILNNTYKHVHQRRKRFTQAAVLTSPTSVISQATAETIINGLKPLVSCLCTSQNLQECETAVLAIARAWKDSKADPGVRSYLSEPPIVNGFVEILSASMDREVLRTTLFILSELIFADENVGEFLTSEDSDFDCLAALLKNGLAEAAILLCQMKPVFAQLSDHDLIPSLVQIILNKNEDSDDLQFVMEPKDAAIAMLEQILIGGDENSRSLNALGVISASGIPALLKCLNGVDLRRSIVSILLCCMQAERSCRNLIANGVELTPVLELFHAGNDSERGICVHFLSELVLLNRRTLCNQILQIIKDEGAFSTMHTLLVYLQMAPMEQQPAIASLLLQLDLLTEPRKMSIYREEAIDSLIESLRRRDFSSSQSIALDALLSLTGRLTSSGKSYTEAWLLKIAGFDQPYNALMKAERKRKLDDELTETMEEEEKATRAWEKRVALVFCSHEKGSIFKILEECLKSNSVEIAKSCLIIVTWLCHMLSSLPDTGVRDIARKSFLDEFINVLQSSCNLEEKILAGLALKTFISDQAALEEMGKHAKCICKTLRKLKRNSVVAGEITKALMNLSSVNATELWNYTEVAELDSGINGEVLSLIHLNSRLLSSHSDGTIKLWDAGKKVLRLIQDVNKHTKAVTCLRLSSSGDILYSGSLDRTIRVWTVKPDEIQCIQVHDVKEAVYELTANVNVACFVSHGTGVNVYSWSGAPKHINFNKYVKCLALSDDKLYCGCSGDSIQEVDLSKHTSNTFYAGIRKLLWKQTIYSLHIHDGLLFSGGSSVDATAGRIFSISTKAVVGSFSIGLDIHRIAVNSDFIFTATKCGVIEVWLKEKYTKIASIKTGSGGNAKITSLATDVDGGMLFAGTSDSKIQVWALD 1435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13862254 13868452 - Conep04aG0203800.1 Cone4ag1974 436952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1974 1435 SUPERFAMILY RING/U-box 447 534 - -
Cone4ag1974 1435 SMART WD40_4 1258 1301 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 SMART WD40_4 1141 1179 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 SMART WD40_4 1184 1223 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 SMART WD40_4 1391 1433 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 SMART WD40_4 1352 1388 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1191 1225 - -
Cone4ag1974 1435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1401 1435 - -
Cone4ag1974 1435 Pfam WD domain, G-beta repeat 1188 1222 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 Pfam WD domain, G-beta repeat 1156 1179 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 Pfam WD domain, G-beta repeat 1403 1432 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 SUPERFAMILY ARM repeat 606 1092 IPR016024 -
Cone4ag1974 1435 ProSiteProfiles Trp-Asp (WD) repeats profile. 1401 1435 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 ProSiteProfiles U-box domain profile. 456 531 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1974 1435 MobiDBLite consensus disorder prediction 399 417 - -
Cone4ag1974 1435 Gene3D - 1138 1316 IPR015943 GO:0005515(InterPro)
Cone4ag1974 1435 MobiDBLite consensus disorder prediction 432 458 - -
Cone4ag1974 1435 ProSiteProfiles Trp-Asp (WD) repeats profile. 1191 1225 IPR001680 GO:0005515(InterPro)
Cone4ag1974 1435 MobiDBLite consensus disorder prediction 326 354 - -
Cone4ag1974 1435 Pfam U-box domain 458 528 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1974 1435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 537 IPR013083 -
Cone4ag1974 1435 Gene3D - 1317 1435 IPR015943 GO:0005515(InterPro)
Cone4ag1974 1435 MobiDBLite consensus disorder prediction 379 418 - -
Cone4ag1974 1435 Coils Coil 977 1000 - -
Cone4ag1974 1435 CDD RING-Ubox_PUB 458 510 IPR045210 -
Cone4ag1974 1435 SMART Ubox_2 460 524 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone4ag1974 1435 MobiDBLite consensus disorder prediction 432 452 - -
Cone4ag1974 1435 SUPERFAMILY WD40 repeat-like 1163 1434 IPR036322 GO:0005515(InterPro)
Cone4ag1974 1435 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1434 IPR052858 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1974 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0351 Cone-Chr15:1637834 Cone4ag1974 Cone-Chr4:13862254 5.76E-08 dispersed
Cone4ag1974 Cone-Chr4:13862254 Cone5ag1520 Cone-Chr5:10357750 6.24E-58 dispersed
Cone16ag0731 Cone-Chr16:8435387 Cone4ag1974 Cone-Chr4:13862254 2.58E-254 transposed
Cone4ag0143 Cone-Chr4:655854 Cone4ag1974 Cone-Chr4:13862254 2.66E-16 transposed
Cone17ag1462 Cone-Chr17:9910382 Cone4ag1974 Cone-Chr4:13862254 5.52E-09 wgd
Cone3ag1183 Cone-Chr3:30496195 Cone4ag1974 Cone-Chr4:13862254 3.97E-15 wgd
Cone4ag1974 Cone-Chr4:13862254 Cone7ag1892 Cone-Chr7:12152344 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39