Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1978 ATGGCAACACGTAAGCGATATCAGATTCTTTTGTATTTTCCCTCTACAAATACAAACATCATATGCATCAGAATCTCTACTCCTGGCAAAGTTTCGGATCCAGCCTACTTTACCTTCTCTCATTCTTCTTCTTCGTCTTCTTCTCTTGACTTCAGCTCAAAAGTAATGGCTACAATAACAACACCACTATTGCTTTCCCTGTTAACACTGGATCTGTTCATTACAGGAGTGTATTCAACGACCTTCATGATAGTAAACAAATGCGAAGATACAATATGGCCAGGCATTCTCTCAAACGCAGGCGTTCCGCCATTTCCGACCACGGGCTTTGCTCTTCAAACCGGCGAGTCCAAGACCCTCACCGCTCCCACTTCTTGGGGTGGTCGTTTCTGGGGTCGGACCCAATGTACTCAAGACACTACTACCGGAAAATTCTCCTGCGTTACTGGTGATTGTGCCTCCAACAAGCTTGAATGCGCTGGCAATGGCGCCTTGCCGCCTGCTACTCTTGCCGAGTTCACACTAAACGGTGCTGGCGGGCTCGATTTCTTTGACGTCAGCTTGGTGGATGGGTACAACCTCCCTATGCTGGTGGTTCCTCAGGGAGGGACCGGAAACAACTGTACAAGCACCGGCTGCGTGGTGGATCTTAACGGCTCGTGTCCGGCTGAGCTGAAGGTGACAAGCTTGGATGGAGATGGCGTGGCTTGCAAGAGTGCGTGCGAGGCTTTCGGACAGCCTCAGTACTGCTGCAGTGGCGCGTACGCTACACCCGACACGTGCAAGCCATCTTCGTACTCGGAGATCTTCAAGAACGCGTGCCCCCGCGCTTACAGCTATGCTTACGACGATAAGACCAGCACTTTCACATGTGCCGCTGCAGATTATGTTATCACTTTCTGCCCATCCCCTAACACCAGCCAGAAATCATCCCAAGGTCAGAACACTCCGACCAGTCCGACGCAAACGACAAACACGCCAGGATCGTTGATCAGCAGCACGATGGTTTACGAAGGAGCGGAGTTAGATCAAAGCGGAGCATCGTCATCGTCTATGTGGGGCCACGTATTGGGATCCAACGCGGTGGTGGGTGTAGTCAGCTTAGCGATGGCATTTTGGCGGGTGTGGCAGCTCTACTAA 1140 51.49 MATRKRYQILLYFPSTNTNIICIRISTPGKVSDPAYFTFSHSSSSSSSLDFSSKVMATITTPLLLSLLTLDLFITGVYSTTFMIVNKCEDTIWPGILSNAGVPPFPTTGFALQTGESKTLTAPTSWGGRFWGRTQCTQDTTTGKFSCVTGDCASNKLECAGNGALPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMLVVPQGGTGNNCTSTGCVVDLNGSCPAELKVTSLDGDGVACKSACEAFGQPQYCCSGAYATPDTCKPSSYSEIFKNACPRAYSYAYDDKTSTFTCAAADYVITFCPSPNTSQKSSQGQNTPTSPTQTTNTPGSLISSTMVYEGAELDQSGASSSSMWGHVLGSNAVVGVVSLAMAFWRVWQLY 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13879218 13880907 + Conep04aG0204200.1 Cone4ag1978 436956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1978 379 ProSiteProfiles Thaumatin family profile. 79 302 IPR001938 -
Cone4ag1978 379 PRINTS Pathogenesis-related protein signature 129 140 IPR001938 -
Cone4ag1978 379 PRINTS Pathogenesis-related protein signature 81 93 IPR001938 -
Cone4ag1978 379 PRINTS Pathogenesis-related protein signature 182 198 IPR001938 -
Cone4ag1978 379 PRINTS Pathogenesis-related protein signature 292 301 IPR001938 -
Cone4ag1978 379 SMART tha2 82 302 IPR001938 -
Cone4ag1978 379 FunFam THAUMATIN-LIKE PROTEIN 1 80 302 - -
Cone4ag1978 379 MobiDBLite consensus disorder prediction 305 328 - -
Cone4ag1978 379 SUPERFAMILY Osmotin, thaumatin-like protein 80 303 IPR037176 -
Cone4ag1978 379 CDD TLP-PA 81 301 - -
Cone4ag1978 379 Pfam Thaumatin family 86 302 IPR001938 -
Cone4ag1978 379 Gene3D Thaumatin 80 302 IPR037176 -
Cone4ag1978 379 PANTHER OS03G0233200 PROTEIN 72 302 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1190 Cone-Chr3:30563508 Cone4ag1978 Cone-Chr4:13879218 7.64E-120 dispersed
Cone4ag1978 Cone-Chr4:13879218 Cone9ag1609 Cone-Chr9:11505533 2.03E-93 dispersed
Cone17ag1410 Cone-Chr17:9689129 Cone4ag1978 Cone-Chr4:13879218 9.13E-145 wgd
Cone20ag0072 Cone-Chr20:349185 Cone4ag1978 Cone-Chr4:13879218 8.50E-151 wgd
Cone3ag1189 Cone-Chr3:30555498 Cone4ag1978 Cone-Chr4:13879218 6.45E-98 wgd
Cone4ag1978 Cone-Chr4:13879218 Cone7ag1896 Cone-Chr7:12165863 1.99E-84 wgd
Cone4ag1978 Cone-Chr4:13879218 Cone8ag0854 Cone-Chr8:8476467 2.14E-127 wgd
Cone4ag1978 Cone-Chr4:13879218 Cone9ag1608 Cone-Chr9:11503598 4.35E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1978 - - - 0.0