Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1980 ATGCTGGCAAAATACGCCAATCTAAAGGAGTCGATACAGCGTGAAATCTACTCTAGCGAATTGCAGTATATAAACCGGAGTGGGGAGAAGCTTTCGAACCTAGTATTGGCAGACGAAGATCAGTTGAGCGAAGCTACTAGAAGAAGTTCAGACAAGACGATGGGGAAGTGGACGATCCCTTCCGTTCTGCTCCTACTTTGCCTTCTTTCCGTTCTACCAGATCAAGGTCGTAAACTACACGCCAATGCGGAGGGAGATGCAGATGAGTTTGTAGATCCGCCGAAGGTAGAAGACAAGATCGGCGCAGTTCCACATGGATTATCCACTGATTCTGAAGTCGCTAAGAGGGAGGCAGAGTCAATCTCTAGGAAATCTCTCCGCACCAACGCAGAGAAGTTTGAGTTCCAGGCCGAGGTCTCTCGGCTTATGGACATTATCATCAACTCCCTTTACAGTAATAAAGACATTTTCCTGAGGGAGTTGATTTCCAACGCTTCAGATGCTCTGGATAAAATCAGGTTCCTTTCCCTCACAGAGAAAGAAATTTTGGGTGAAGGCGATAACACGAAGCTGGAGATACAGATTAAGTTGGACAAGGAAAAGAAGATCCTTTCCATCCGTGACCGAGGTATCGGTATGACCAAAGAGGATCTAATCAAGAACTTGGGAACGATAGCAAAATCTGGAACTTCAGCATTTGTGGAGAAAATGCAATCAAGTGGAGATCTCAATCTCATCGGGCAATTTGGAGTGGGGTTCTATTCTGTGTACCTTGTAGCTGATTATGTGGAAGTCATTAGCAAAAACAATGACGACAAACAGTATGTTTGGGAATCGAAGGCTGATGGGGCGTTTGCAATCTCTGAAGATACATGGAATGAGCCTTTAGGACGTGGAACTGAGATTAGATTGCATCTCAGGGAGGAAGCTGGGGAGTACTTGGAGGAGAGCAAACTAAAAGATCTGGTTAAAAAATATTCTGAATTTATCAACTTCCCCATTTCCATTTGGGCGAGCAAAGAAGTTGATGTCGAGGTTCCTGCTGATGAAGATGAATCCAGTGATGAAGAAGAAAAACCCGAAAGCAGTTCTTCTGAAGAGGAGGAAGAGGAGAAAAGTGAAGATGAAGATTCTGAGAAAAAGCCAAAGACAAAGACAGTGAAGGAAACAACTTATGAATGGGAGCTTTTAAATGATGTTAAAGCTATATGGCTGCGTAGTCCAAAGGAGGTGACAGAGGAAGAGTATTCCAAGTTCTATCGCTCTCTTGCTAAGGATTTCAGTGATGAAAAGCCTTTAGCATGGAGTCACTTCAATGCTGAAGGTGATGTTGAGTTCAAGGCTGTTTTGTTTGTGCCTCCTAAGGCTCCTCATGACCTTTACGAGAGTTATTATAACAGCAACAAATCCAACTTAAAGTTATATGTTAGACGGGTTTTCATTTCAGATGAATTTGATGACCTTTTGCCCAAGTATCTCAACTTCTTGAAGGGTCTTGTTGATTCCGACACTCTGCCACTCAATGTATCACGAGAAATGCTTCAACAACACAGCAGCTTGAAAACAATCAAGAAGAAGCTTATCCGGAAGGCACTTGATATGATCCGGAAAATAGCTGATGAAGACCCTGATGAGTCCTCTGGTAAAGACAATAAAGATGTTGAAAATTCCAGTGACAATAACGAGAAGAAGGGCCAGTACACCAAATTCTGGAATGAGTTTGGCAAGTCCATTAAACTAGGTATCATTGAGGATGCAACCAACAGGAACCGTCTGGCAAAACTACTAAGATTTGAGAGCACCAAGTCAGATGGTAAATTGACTACGCTGGATCAGTATATCTCGAGAATGAGATCAGGACAAAAGGATATCTTTTACCTAACAGGAACCAGCAAGGAACAACTTGAAAACTCACCATTCCTTGAGCGGCTTAAGAAGAAGAATTATGAGGTCATTTTCTTCACAGATCCCGTTGACGAGTACCTCATGCAATATCTCATGGACTATGAAGACAAGAAATTCCAGAACGTATCCAAGGAGGGTCTCAAACTTGGGAAAGACTCAAAAGCTAAGGAACTCAAGGAGTCGTTTAAAGATCTCACCAAGTGGTGGAAGACCACCCTTGCAAGTGATAACATCGATGATGTGAAAGTTTCCAACCGTCTGGACAATACCCCTTGTGTGGTTGTCACATCCAAGTATGGTTGGAGTGCAAACATGGAGAAGATCATGACTTCTCAGACATTATCTGATGCCAACAAACAAGCTTACATGCGTGGTAAGAGGGTTCTGGAGATCAACCCAAGGCACCCCATCATTAAGGAGCTTCGAGACAGAGTGTTGAAGAATCCAGAGGACGAGGGTGTAAAGAATACAGCACAACTAATGTACCAGACGGCTTTACTGGAGAGTGGCTTCTTGCTTCAAGACCCCAAGGATTTCGCCAACCGAATCTACGACACGGTGAAGTCTAGACTTGACATCAGTCCAGATGCAACAGTGGAGGAAGAAGAAGAGGTTGAAGAAACCGTGGTTGAAACTGAGACCAAGGAAGATGCTGATGCTGCCAAGCCTAAGTTTGAAACAGCGGATGATGAGGACACAGAACCTACCACTCTCAAGGACGAGTTGTAG 2634 43.62 MLAKYANLKESIQREIYSSELQYINRSGEKLSNLVLADEDQLSEATRRSSDKTMGKWTIPSVLLLLCLLSVLPDQGRKLHANAEGDADEFVDPPKVEDKIGAVPHGLSTDSEVAKREAESISRKSLRTNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTEKEILGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQSSGDLNLIGQFGVGFYSVYLVADYVEVISKNNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLREEAGEYLEESKLKDLVKKYSEFINFPISIWASKEVDVEVPADEDESSDEEEKPESSSSEEEEEEKSEDEDSEKKPKTKTVKETTYEWELLNDVKAIWLRSPKEVTEEEYSKFYRSLAKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNSNKSNLKLYVRRVFISDEFDDLLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIADEDPDESSGKDNKDVENSSDNNEKKGQYTKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESTKSDGKLTTLDQYISRMRSGQKDIFYLTGTSKEQLENSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKAKELKESFKDLTKWWKTTLASDNIDDVKVSNRLDNTPCVVVTSKYGWSANMEKIMTSQTLSDANKQAYMRGKRVLEINPRHPIIKELRDRVLKNPEDEGVKNTAQLMYQTALLESGFLLQDPKDFANRIYDTVKSRLDISPDATVEEEEEVEETVVETETKEDADAAKPKFETADDEDTEPTTLKDEL 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13886786 13891326 - Conep04aG0204400.1 Cone4ag1980 436958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1980 877 FunFam endoplasmin homolog 399 592 - -
Cone4ag1980 877 SMART HKATPase_4 153 310 IPR003594 -
Cone4ag1980 877 Gene3D - 593 680 - -
Cone4ag1980 877 ProSitePatterns Heat shock hsp90 proteins family signature. 151 160 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone4ag1980 877 SUPERFAMILY Ribosomal protein S5 domain 2-like 400 680 IPR020568 -
Cone4ag1980 877 CDD HATPase_Hsp90-like 140 330 IPR020575 -
Cone4ag1980 877 FunFam endoplasmin homolog 593 680 - -
Cone4ag1980 877 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 159 273 - -
Cone4ag1980 877 MobiDBLite consensus disorder prediction 345 375 - -
Cone4ag1980 877 MobiDBLite consensus disorder prediction 849 877 - -
Cone4ag1980 877 MobiDBLite consensus disorder prediction 539 562 - -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 131 151 IPR020575 -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 298 315 IPR020575 -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 316 334 IPR020575 -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 246 268 IPR020575 -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 152 174 IPR020575 -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 221 238 IPR020575 -
Cone4ag1980 877 PRINTS 90kDa heat shock protein signature 203 220 IPR020575 -
Cone4ag1980 877 MobiDBLite consensus disorder prediction 830 877 - -
Cone4ag1980 877 SUPERFAMILY HSP90 C-terminal domain 699 822 IPR037196 -
Cone4ag1980 877 MobiDBLite consensus disorder prediction 345 385 - -
Cone4ag1980 877 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 121 839 IPR001404 GO:0005524(InterPro)|GO:0006457(PANTHER)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Cone4ag1980 877 MobiDBLite consensus disorder prediction 539 563 - -
Cone4ag1980 877 Gene3D - 119 354 IPR036890 -
Cone4ag1980 877 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 131 340 IPR036890 -
Cone4ag1980 877 FunFam Heat shock protein 90 122 356 - -
Cone4ag1980 877 Gene3D - 687 833 IPR037196 -
Cone4ag1980 877 FunFam Endoplasmin-like isoform B 687 833 - -
Cone4ag1980 877 PIRSF HSP90_HTPG 106 867 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone4ag1980 877 MobiDBLite consensus disorder prediction 832 848 - -
Cone4ag1980 877 Pfam Hsp90 protein 312 851 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone4ag1980 877 Hamap Chaperone protein HtpG [htpG]. 128 823 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cone4ag1980 877 Gene3D - 399 592 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1980 K09487 - - gmx:100779976 1326.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1191 Cone-Chr1:55855561 Cone4ag1980 Cone-Chr4:13886786 1.91E-214 dispersed
Cone4ag1980 Cone-Chr4:13886786 Cone7ag1898 Cone-Chr7:12170936 0 dispersed
Cone4ag1979 Cone-Chr4:13882016 Cone4ag1980 Cone-Chr4:13886786 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38