Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1987 ATGTCAGCGCCGGTGGCGGCTAGCAGTAGTAATGTGTGGAGTATGGAGGTGCAGATTAAGCATTATCCGGAGCCTCTTGCCTCCCATGAAGAGATTATCAAGGACTCTGCTATTTTTTGGGATACTCTCAGGCGCTTCCATTTTTTAATGAACACCAAGTTCATGATTCCTGTGATTGGCGGGAAGGAGCTAGACTTGCATGTATTATATTCAGAAGTTACCAGAAAGGGTGGTCATGAGAAGGTTGTTGCAGAAAAGAAATGGAGGGAAGTGGGAAATGTATTTAACTTCTCTCCAACAACAACAAGTGCTTCATTTGTGTTGAGGAAACACTACTTTAGTCTCCTTCACCATTATGAGCAGGTTCACTTCTTTCAAAGGCAAGGCCCTCTATCTACTCCACCAGCTTCATTTGCTTTTGGTGAACCCTCATGCAAAAATGAACTGGCTCTAGTGGAATTTACTCCCGGAACGTTGTCGGATTGTCCAGCTGTGCACACTCAAGTAACAGGAATAATTGATGGGAAATTCGACTGCGGTTATCTGGTGACTGTAAAAGTGGGGTCGGACATCTTTAAAGGAGCACTTTATCATCCAGACCAGCCGGATTCTCGTACCTCGTTTTTGCAATCGAGCAATGCCCTCGTGCCTTACAATGACACATCTCGCCCTACCAGTCGTAGGAGGAGAAGGAAACGAAGAAAGGGAGATCCGAATTACCCAAAACCAAACAGGAGTGGATACAACTTTTTCTTTGCGGAAAAGCATTACAAGCTCAAGTCGCTCTTCCCAAATAGAGAGAGGGAGTTTACGAAGATGATAGGAGAATCTTGGAGCAATCTCAGTCCAGAAGAGAGGATGGTTTACCAGAATATAGGAGTGAAAGATAAAGAAAGGTACAAGAGGGAATTGACAGAGTACAGAGAGAGAATGAGACCAGACAAACTAGACCTAGGGCATTAA 963 44.34 MSAPVAASSSNVWSMEVQIKHYPEPLASHEEIIKDSAIFWDTLRRFHFLMNTKFMIPVIGGKELDLHVLYSEVTRKGGHEKVVAEKKWREVGNVFNFSPTTTSASFVLRKHYFSLLHHYEQVHFFQRQGPLSTPPASFAFGEPSCKNELALVEFTPGTLSDCPAVHTQVTGIIDGKFDCGYLVTVKVGSDIFKGALYHPDQPDSRTSFLQSSNALVPYNDTSRPTSRRRRRKRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLFPNREREFTKMIGESWSNLSPEERMVYQNIGVKDKERYKRELTEYRERMRPDKLDLGH 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13923663 13925111 + Conep04aG0205200.1 Cone4ag1987 436965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1987 320 SUPERFAMILY HMG-box 238 311 IPR036910 -
Cone4ag1987 320 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677(InterPro)
Cone4ag1987 320 SMART bright_3 34 125 IPR001606 GO:0003677(InterPro)
Cone4ag1987 320 Gene3D - 8 132 IPR036431 GO:0003677(InterPro)
Cone4ag1987 320 CDD HMG-box_AtHMGB9-like 241 307 - -
Cone4ag1987 320 Gene3D High mobility group box domain 225 317 IPR036910 -
Cone4ag1987 320 SMART ARID_2 30 120 - -
Cone4ag1987 320 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Cone4ag1987 320 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677(InterPro)
Cone4ag1987 320 SMART hmgende2 240 309 IPR009071 -
Cone4ag1987 320 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 314 - -
Cone4ag1987 320 MobiDBLite consensus disorder prediction 213 246 - -
Cone4ag1987 320 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Cone4ag1987 320 Pfam ARID/BRIGHT DNA binding domain 37 120 IPR001606 GO:0003677(InterPro)
Cone4ag1987 320 SUPERFAMILY ARID-like 28 133 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1987 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0406 Cone-Chr4:1842806 Cone4ag1987 Cone-Chr4:13923663 1.72E-79 dispersed
Cone4ag1987 Cone-Chr4:13923663 Cone7ag0393 Cone-Chr7:1752040 4.02E-78 dispersed
Cone17ag1432 Cone-Chr17:9780674 Cone4ag1987 Cone-Chr4:13923663 4.04E-140 wgd
Cone20ag0052 Cone-Chr20:254125 Cone4ag1987 Cone-Chr4:13923663 1.13E-137 wgd
Cone4ag1987 Cone-Chr4:13923663 Cone7ag1916 Cone-Chr7:12263604 3.06E-207 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag0393 . 25 367 ARID Transcription Factor Family AT1G04880 58.8 5.4e-101 365.5
Cone4ag0406 . 18 364 ARID Transcription Factor Family AT1G04880 57.7 1.9e-98 357.1
Cone8ag0922 . 194 481 ARID Transcription Factor Family AT1G20910 58.0 5.4e-89 325.5
Cone12ag0889 . 189 476 ARID Transcription Factor Family AT1G20910 57.0 8.6e-87 318.2
Cone4ag1987 . 2 312 ARID Transcription Factor Family AT1G76110 64.2 1.4e-109 393.7
Cone7ag1916 . 22 306 ARID Transcription Factor Family AT1G76110 66.1 1.5e-108 390.2
Cone17ag1432 . 1 293 ARID Transcription Factor Family AT1G76110 62.7 7.4e-103 371.3
Cone20ag0052 . 5 293 ARID Transcription Factor Family AT1G76110 63.6 9.6e-103 370.9
Cone8ag0922 . 212 511 ARID Transcription Factor Family AT1G76510 63.5 8.3e-107 384.8
Cone12ag0889 . 207 506 ARID Transcription Factor Family AT1G76510 64.3 8.3e-107 384.8
Cone4ag0844 . 2 780 ARID Transcription Factor Family AT3G43240 62.4 1.5e-281 966.1
Cone7ag0835 . 2 780 ARID Transcription Factor Family AT3G43240 62.7 1.7e-280 962.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46080 PF00069 Pkinase 5.50E-70 CL0016 Cone TR