Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone4ag1987 | ATGTCAGCGCCGGTGGCGGCTAGCAGTAGTAATGTGTGGAGTATGGAGGTGCAGATTAAGCATTATCCGGAGCCTCTTGCCTCCCATGAAGAGATTATCAAGGACTCTGCTATTTTTTGGGATACTCTCAGGCGCTTCCATTTTTTAATGAACACCAAGTTCATGATTCCTGTGATTGGCGGGAAGGAGCTAGACTTGCATGTATTATATTCAGAAGTTACCAGAAAGGGTGGTCATGAGAAGGTTGTTGCAGAAAAGAAATGGAGGGAAGTGGGAAATGTATTTAACTTCTCTCCAACAACAACAAGTGCTTCATTTGTGTTGAGGAAACACTACTTTAGTCTCCTTCACCATTATGAGCAGGTTCACTTCTTTCAAAGGCAAGGCCCTCTATCTACTCCACCAGCTTCATTTGCTTTTGGTGAACCCTCATGCAAAAATGAACTGGCTCTAGTGGAATTTACTCCCGGAACGTTGTCGGATTGTCCAGCTGTGCACACTCAAGTAACAGGAATAATTGATGGGAAATTCGACTGCGGTTATCTGGTGACTGTAAAAGTGGGGTCGGACATCTTTAAAGGAGCACTTTATCATCCAGACCAGCCGGATTCTCGTACCTCGTTTTTGCAATCGAGCAATGCCCTCGTGCCTTACAATGACACATCTCGCCCTACCAGTCGTAGGAGGAGAAGGAAACGAAGAAAGGGAGATCCGAATTACCCAAAACCAAACAGGAGTGGATACAACTTTTTCTTTGCGGAAAAGCATTACAAGCTCAAGTCGCTCTTCCCAAATAGAGAGAGGGAGTTTACGAAGATGATAGGAGAATCTTGGAGCAATCTCAGTCCAGAAGAGAGGATGGTTTACCAGAATATAGGAGTGAAAGATAAAGAAAGGTACAAGAGGGAATTGACAGAGTACAGAGAGAGAATGAGACCAGACAAACTAGACCTAGGGCATTAA | 963 | 44.34 | MSAPVAASSSNVWSMEVQIKHYPEPLASHEEIIKDSAIFWDTLRRFHFLMNTKFMIPVIGGKELDLHVLYSEVTRKGGHEKVVAEKKWREVGNVFNFSPTTTSASFVLRKHYFSLLHHYEQVHFFQRQGPLSTPPASFAFGEPSCKNELALVEFTPGTLSDCPAVHTQVTGIIDGKFDCGYLVTVKVGSDIFKGALYHPDQPDSRTSFLQSSNALVPYNDTSRPTSRRRRRKRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLFPNREREFTKMIGESWSNLSPEERMVYQNIGVKDKERYKRELTEYRERMRPDKLDLGH | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 13923663 | 13925111 | + | Conep04aG0205200.1 | Cone4ag1987 | 436965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone4ag1987 | 320 | SUPERFAMILY | HMG-box | 238 | 311 | IPR036910 | - | |
Cone4ag1987 | 320 | CDD | ARID_HMGB9-like | 35 | 120 | IPR045303 | GO:0003677(InterPro) | |
Cone4ag1987 | 320 | SMART | bright_3 | 34 | 125 | IPR001606 | GO:0003677(InterPro) | |
Cone4ag1987 | 320 | Gene3D | - | 8 | 132 | IPR036431 | GO:0003677(InterPro) | |
Cone4ag1987 | 320 | CDD | HMG-box_AtHMGB9-like | 241 | 307 | - | - | |
Cone4ag1987 | 320 | Gene3D | High mobility group box domain | 225 | 317 | IPR036910 | - | |
Cone4ag1987 | 320 | SMART | ARID_2 | 30 | 120 | - | - | |
Cone4ag1987 | 320 | Pfam | HMG (high mobility group) box | 241 | 308 | IPR009071 | - | |
Cone4ag1987 | 320 | ProSiteProfiles | ARID domain profile. | 33 | 124 | IPR001606 | GO:0003677(InterPro) | |
Cone4ag1987 | 320 | SMART | hmgende2 | 240 | 309 | IPR009071 | - | |
Cone4ag1987 | 320 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 11 | 314 | - | - | |
Cone4ag1987 | 320 | MobiDBLite | consensus disorder prediction | 213 | 246 | - | - | |
Cone4ag1987 | 320 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 241 | 308 | IPR009071 | - | |
Cone4ag1987 | 320 | Pfam | ARID/BRIGHT DNA binding domain | 37 | 120 | IPR001606 | GO:0003677(InterPro) | |
Cone4ag1987 | 320 | SUPERFAMILY | ARID-like | 28 | 133 | IPR036431 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone4ag0406 | Cone-Chr4:1842806 | Cone4ag1987 | Cone-Chr4:13923663 | 1.72E-79 | dispersed | |
Cone4ag1987 | Cone-Chr4:13923663 | Cone7ag0393 | Cone-Chr7:1752040 | 4.02E-78 | dispersed | |
Cone17ag1432 | Cone-Chr17:9780674 | Cone4ag1987 | Cone-Chr4:13923663 | 4.04E-140 | wgd | |
Cone20ag0052 | Cone-Chr20:254125 | Cone4ag1987 | Cone-Chr4:13923663 | 1.13E-137 | wgd | |
Cone4ag1987 | Cone-Chr4:13923663 | Cone7ag1916 | Cone-Chr7:12263604 | 3.06E-207 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46080 | PF00069 | Pkinase | 5.50E-70 | CL0016 | Cone | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone4ag1987 | - | - | - | 0.0 |