Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1987 ATGTCAGCGCCGGTGGCGGCTAGCAGTAGTAATGTGTGGAGTATGGAGGTGCAGATTAAGCATTATCCGGAGCCTCTTGCCTCCCATGAAGAGATTATCAAGGACTCTGCTATTTTTTGGGATACTCTCAGGCGCTTCCATTTTTTAATGAACACCAAGTTCATGATTCCTGTGATTGGCGGGAAGGAGCTAGACTTGCATGTATTATATTCAGAAGTTACCAGAAAGGGTGGTCATGAGAAGGTTGTTGCAGAAAAGAAATGGAGGGAAGTGGGAAATGTATTTAACTTCTCTCCAACAACAACAAGTGCTTCATTTGTGTTGAGGAAACACTACTTTAGTCTCCTTCACCATTATGAGCAGGTTCACTTCTTTCAAAGGCAAGGCCCTCTATCTACTCCACCAGCTTCATTTGCTTTTGGTGAACCCTCATGCAAAAATGAACTGGCTCTAGTGGAATTTACTCCCGGAACGTTGTCGGATTGTCCAGCTGTGCACACTCAAGTAACAGGAATAATTGATGGGAAATTCGACTGCGGTTATCTGGTGACTGTAAAAGTGGGGTCGGACATCTTTAAAGGAGCACTTTATCATCCAGACCAGCCGGATTCTCGTACCTCGTTTTTGCAATCGAGCAATGCCCTCGTGCCTTACAATGACACATCTCGCCCTACCAGTCGTAGGAGGAGAAGGAAACGAAGAAAGGGAGATCCGAATTACCCAAAACCAAACAGGAGTGGATACAACTTTTTCTTTGCGGAAAAGCATTACAAGCTCAAGTCGCTCTTCCCAAATAGAGAGAGGGAGTTTACGAAGATGATAGGAGAATCTTGGAGCAATCTCAGTCCAGAAGAGAGGATGGTTTACCAGAATATAGGAGTGAAAGATAAAGAAAGGTACAAGAGGGAATTGACAGAGTACAGAGAGAGAATGAGACCAGACAAACTAGACCTAGGGCATTAA 963 44.34 MSAPVAASSSNVWSMEVQIKHYPEPLASHEEIIKDSAIFWDTLRRFHFLMNTKFMIPVIGGKELDLHVLYSEVTRKGGHEKVVAEKKWREVGNVFNFSPTTTSASFVLRKHYFSLLHHYEQVHFFQRQGPLSTPPASFAFGEPSCKNELALVEFTPGTLSDCPAVHTQVTGIIDGKFDCGYLVTVKVGSDIFKGALYHPDQPDSRTSFLQSSNALVPYNDTSRPTSRRRRRKRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLFPNREREFTKMIGESWSNLSPEERMVYQNIGVKDKERYKRELTEYRERMRPDKLDLGH 320
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 13923663 13925111 + Conep04aG0205200.1 Cone4ag1987 436965
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1987 320 SUPERFAMILY HMG-box 238 311 IPR036910 -
Cone4ag1987 320 CDD ARID_HMGB9-like 35 120 IPR045303 GO:0003677(InterPro)
Cone4ag1987 320 SMART bright_3 34 125 IPR001606 GO:0003677(InterPro)
Cone4ag1987 320 Gene3D - 8 132 IPR036431 GO:0003677(InterPro)
Cone4ag1987 320 CDD HMG-box_AtHMGB9-like 241 307 - -
Cone4ag1987 320 Gene3D High mobility group box domain 225 317 IPR036910 -
Cone4ag1987 320 SMART ARID_2 30 120 - -
Cone4ag1987 320 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Cone4ag1987 320 ProSiteProfiles ARID domain profile. 33 124 IPR001606 GO:0003677(InterPro)
Cone4ag1987 320 SMART hmgende2 240 309 IPR009071 -
Cone4ag1987 320 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 314 - -
Cone4ag1987 320 MobiDBLite consensus disorder prediction 213 246 - -
Cone4ag1987 320 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Cone4ag1987 320 Pfam ARID/BRIGHT DNA binding domain 37 120 IPR001606 GO:0003677(InterPro)
Cone4ag1987 320 SUPERFAMILY ARID-like 28 133 IPR036431 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0406 Cone-Chr4:1842806 Cone4ag1987 Cone-Chr4:13923663 1.72E-79 dispersed
Cone4ag1987 Cone-Chr4:13923663 Cone7ag0393 Cone-Chr7:1752040 4.02E-78 dispersed
Cone17ag1432 Cone-Chr17:9780674 Cone4ag1987 Cone-Chr4:13923663 4.04E-140 wgd
Cone20ag0052 Cone-Chr20:254125 Cone4ag1987 Cone-Chr4:13923663 1.13E-137 wgd
Cone4ag1987 Cone-Chr4:13923663 Cone7ag1916 Cone-Chr7:12263604 3.06E-207 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46080 PF00069 Pkinase 5.50E-70 CL0016 Cone TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1987 - - - 0.0