Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag1994 ATGGCCAAAGCCATTTTTCCATTGGCCATTTTGCTGGTTTCCTTCAACTTTTTCATCAATGTCAAGGCCTTTACGGCTTCAGGGTGGAATAAAGCTCACGCCACCTATTACGGAGGCAGCGATGCTTCGGGAACATTGGGGGGAGCCTGTGGATTTGGTAACTTATATTCAACAGGGTACGGGACTAGGACGGCAGCTCTGAGTACGGCTTTGTTCGGGGAAGGAGCTGCTTGTGGGCAATGCTATAAGATCATGTGTGATTACAGTTTAGATTCCAAATGGTGTAAGAAGGGAACCTCTGTAACTGTCACAGCAACTAACTTTTGCCCTCCAAACTTTGCTCAATCAAACGACAACGGAGGCTGGTGCAACACACCACTCCAGCATTTCGACATGGCCCAGCCCGCCTGGGAAAAGATCGGGATCTACCAAGGCGGAATCATACCAGTCCTATTCCAAAGGGTTCCTTGCAAGAAGCATGGTGGAGTTAGATTTGCTATAAATGGGAGAGACTACTTTGAACTAGTGTTGATAACTAATGTGGGAGGAGCAGGGTCCATTCAATCCGTGTCGATAAAAGGCTCGAACACGGGTTGGCTGGCGATGTCAAGGAATTGGGGAGCTAACTGGCAGTCGAATTCATATCTGGACGCCCAATCTCTTTCCTTCAAAGTCACAACCACTGATGGTGTAACCAAAGTCTTCCAGGACATTGTGCCTTCTAACTGGGCGTTTGGTCAGACCTTCTCCAGCAATCTACAATTTTGA 768 47.79 MAKAIFPLAILLVSFNFFINVKAFTASGWNKAHATYYGGSDASGTLGGACGFGNLYSTGYGTRTAALSTALFGEGAACGQCYKIMCDYSLDSKWCKKGTSVTVTATNFCPPNFAQSNDNGGWCNTPLQHFDMAQPAWEKIGIYQGGIIPVLFQRVPCKKHGGVRFAINGRDYFELVLITNVGGAGSIQSVSIKGSNTGWLAMSRNWGANWQSNSYLDAQSLSFKVTTTDGVTKVFQDIVPSNWAFGQTFSSNLQF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13949158 13950131 + Conep04aG0205900.1 Cone4ag1994 436972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag1994 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576(InterPro)
Cone4ag1994 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Cone4ag1994 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576(InterPro)
Cone4ag1994 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576(InterPro)
Cone4ag1994 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576(InterPro)
Cone4ag1994 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576(InterPro)
Cone4ag1994 255 Gene3D - 162 255 IPR036749 -
Cone4ag1994 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Cone4ag1994 255 SUPERFAMILY Barwin-like endoglucanases 18 180 IPR036908 -
Cone4ag1994 255 CDD DPBB_EXPA_N 28 157 - -
Cone4ag1994 255 SMART dpbb_1 64 152 IPR007112 -
Cone4ag1994 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Cone4ag1994 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Cone4ag1994 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Cone4ag1994 255 FunFam Expansin 162 255 - -
Cone4ag1994 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Cone4ag1994 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664(InterPro)
Cone4ag1994 255 Gene3D - 16 158 IPR036908 -
Cone4ag1994 255 PANTHER EXPANSIN-A15 12 251 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1994 Cone-Chr4:13949158 Cone5ag0142 Cone-Chr5:611803 2.70E-114 dispersed
Cone17ag1424 Cone-Chr17:9750694 Cone4ag1994 Cone-Chr4:13949158 5.02E-144 wgd
Cone20ag0059 Cone-Chr20:286845 Cone4ag1994 Cone-Chr4:13949158 5.58E-141 wgd
Cone4ag1994 Cone-Chr4:13949158 Cone7ag1908 Cone-Chr7:12234001 3.30E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag1994 - - - 0.0