Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone4ag1996 | ATGACCCAATCAACACCAAATCACACACAGACTGTCTCTGGCTGGGCAGCTCATGATTCCTCCGGCCTCGTTACTCCTTACACCTTCAAACGCAGAGAAGTGGGCGTGAACGATGTGAACATTTCCATCTTGTACTGTGGAATATGCCACACTGATCTTCACCATGTTAAGAATGACTGGGGCATCACCATGTATCCCGTCGTCCCTGGGCATGAGATAACAGGGGTGGTGACAAAGGTGGGGAGTAATGTCAAGAGGTTCAAAACGGGAGATAAAGTTGGAGTAGGCTGTTTGGCTGCATCTTGTCTGGACTGTGAATTCTGCAACGACTGCAAAGAGAACTACTGTGAGAAGACACAGTTTACTTATAATGGTATTTTTTGGGACGGTAGTATCACATATGGTGGCTACTCTAACATGCTGGTCGCAGATCAAAGGTATGTGGTGCACGTGCCGGAGAGCCTGCCGATGGATGCAGCGGCCCCGTTATTATGCGCGGGGATAACGGTGTTCTGTCCATTAAAAGATCACAACTTGGTTGATTCACCGGGAAAAAGGATCGGAGTGATGGGTCTTGGAGGTTTGGGACACGTGGCAGTCAAATTCGGGAAAGCATTTGGTCACCATGTAACAGTCATAAGTACTTCTCCGTCGAAGCAGAAAGAAGCCACTCAGCGTTTGGGCGCAGACAACTTCATAGTCAGTTTTGACGATGCACAAATGAAGGCCCACAGGAGGAGCTTGGATTTCATATTGGACACGGTGTCGGCAGAGCACTCGATTGGGTCGACCTTGGAATTGCTCAAAGTGGATGGAGTACTAGTGGTGGTGGGTGCACCAGCAAAGCCCATCAAAGTGCCCTCTTTCCCTCTCATATTTGGGAAGAGATCGGTCAAGGGCAGTATGATAGGAGGAATGAAAGAAACACAGGAGATGATGGATTTGTGTGGGAAGCACAATATCACTTGTGATATCGAGCTTGTTAAGCCCACTGAAATTAACCAGGCCTTGGACCGGTTAGCTAAGAACGACGTCCATTACCGTTTCGTCCTCGACATTGCCCAAGCCTCGTCCATTTAG | 1080 | 48.61 | MTQSTPNHTQTVSGWAAHDSSGLVTPYTFKRREVGVNDVNISILYCGICHTDLHHVKNDWGITMYPVVPGHEITGVVTKVGSNVKRFKTGDKVGVGCLAASCLDCEFCNDCKENYCEKTQFTYNGIFWDGSITYGGYSNMLVADQRYVVHVPESLPMDAAAPLLCAGITVFCPLKDHNLVDSPGKRIGVMGLGGLGHVAVKFGKAFGHHVTVISTSPSKQKEATQRLGADNFIVSFDDAQMKAHRRSLDFILDTVSAEHSIGSTLELLKVDGVLVVVGAPAKPIKVPSFPLIFGKRSVKGSMIGGMKETQEMMDLCGKHNITCDIELVKPTEINQALDRLAKNDVHYRFVLDIAQASSI | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 13952663 | 13954186 | - | Conep04aG0206100.1 | Cone4ag1996 | 436974 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone4ag1996 | 359 | Gene3D | - | 166 | 323 | - | - | |
| Cone4ag1996 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 316 | IPR013149 | - | |
| Cone4ag1996 | 359 | PANTHER | ALDEHYDE REDUCTASE | 7 | 355 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
| Cone4ag1996 | 359 | Gene3D | - | 15 | 353 | - | - | |
| Cone4ag1996 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 70 | 84 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Cone4ag1996 | 359 | FunFam | Cinnamyl alcohol dehydrogenase | 166 | 323 | - | - | |
| Cone4ag1996 | 359 | SUPERFAMILY | GroES-like | 18 | 180 | IPR011032 | - | |
| Cone4ag1996 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 155 | 321 | IPR036291 | - | |
| Cone4ag1996 | 359 | SMART | PKS_ER_names_mod | 16 | 351 | IPR020843 | GO:0016491(InterPro) | |
| Cone4ag1996 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 37 | 153 | IPR013154 | - | |
| Cone4ag1996 | 359 | CDD | CAD1 | 14 | 352 | IPR047109 | GO:0016616(InterPro) | |
| Cone4ag1996 | 359 | FunFam | probable cinnamyl alcohol dehydrogenase | 15 | 172 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag1996 | Cone-Chr4:13952663 | Cone8ag0057 | Cone-Chr8:295123 | 5.56E-154 | dispersed | |
| Cone12ag0828 | Cone-Chr12:7509169 | Cone4ag1996 | Cone-Chr4:13952663 | 1.57E-22 | wgd | |
| Cone4ag1996 | Cone-Chr4:13952663 | Cone8ag0863 | Cone-Chr8:8528538 | 1.80E-218 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone4ag1996 | K00083 | - | rcu:8267819 | 597.045 |