Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2004 ATGAGTGCGACGAGGTTTATAAAGTGCGTGACAGTCGGCGATGGTGCTGTAGGCAAAACCTGCTTGCTGATTTCATATACCAGCAACACATTTCCCACGGATTATGTGCCGACTGTATTCGACAATTTCAGTGCTAATGTTGTCGTGGATGGAAGCACAGTCAACCTAGGCCTATGGGATACTGCTGGGCAGGAGGACTACAATAGATTAAGACCATTGAGCTATAGAGGAGCTGATGTTTTTATACTTGCTTTTTCTCTCATAAGCAAGGCTAGCTATGAAAACATCACCAAGAAGTGGATTCCTGAACTGAAACATTATGCTCCAGGCGTTCCAATAATTATCGTTGGAACAAAACTAGATCTTCGCGATGACAAACAGTTCTTTGTAGATCATCCTGGTGCAGTTCCAATTTCAAACGCTCAGGGAGAGGAATTGAAAAGACTAATTGGATCTCCTGCTTACATTGAGTGCAGTTCAAAAACACAACTGAATGTGAAGGCGGTTTTTGATGCAGCCATTAAGGTGGTGCTCCAGCCCCCGAAGCAAAAGAAGAAGAAGAAGAAGAAGACACAGAGAGCATGCTCTATATTATGA 597 43.22 MSATRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENITKKWIPELKHYAPGVPIIIVGTKLDLRDDKQFFVDHPGAVPISNAQGEELKRLIGSPAYIECSSKTQLNVKAVFDAAIKVVLQPPKQKKKKKKKTQRACSIL 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13981446 13983382 - Conep04aG0206900.1 Cone4ag2004 436982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2004 198 SMART rab_sub_5 7 180 - -
Cone4ag2004 198 CDD Rop_like 6 178 - -
Cone4ag2004 198 Pfam Ras family 8 178 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag2004 198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Cone4ag2004 198 ProSiteProfiles small GTPase Ras family profile. 2 198 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag2004 198 SMART rho_sub_3 9 180 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone4ag2004 198 NCBIfam small GTP-binding protein domain 7 171 IPR005225 GO:0005525(InterPro)
Cone4ag2004 198 FunFam rac-like GTP-binding protein RHO1 5 192 - -
Cone4ag2004 198 ProSiteProfiles small GTPase Rab1 family profile. 2 198 - -
Cone4ag2004 198 PANTHER RHO FAMILY GTPASE 5 190 IPR003578 GO:0003924(PANTHER)|GO:0005525(InterPro)|GO:0005525(PANTHER)|GO:0005856(PANTHER)|GO:0007163(PANTHER)|GO:0007264(InterPro)|GO:0008360(PANTHER)|GO:0019901(PANTHER)|GO:0030865(PANTHER)|GO:0031410(PANTHER)|GO:0032956(PANTHER)|GO:0042995(PANTHER)
Cone4ag2004 198 SMART ras_sub_4 4 180 - -
Cone4ag2004 198 Gene3D - 4 192 IPR027417 -
Cone4ag2004 198 PRINTS Transforming protein P21 ras signature 30 46 - -
Cone4ag2004 198 PRINTS Transforming protein P21 ras signature 47 69 - -
Cone4ag2004 198 PRINTS Transforming protein P21 ras signature 109 122 - -
Cone4ag2004 198 PRINTS Transforming protein P21 ras signature 7 28 - -
Cone4ag2004 198 PRINTS Transforming protein P21 ras signature 155 177 - -
Cone4ag2004 198 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2004 K04392 - - vvi:100253703 350.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0826 Cone-Chr12:7498383 Cone4ag2004 Cone-Chr4:13981446 8.40E-125 dispersed
Cone4ag2004 Cone-Chr4:13981446 Cone8ag0862 Cone-Chr8:8523859 3.59E-126 dispersed
Cone17ag1418 Cone-Chr17:9726865 Cone4ag2004 Cone-Chr4:13981446 7.20E-126 wgd
Cone20ag0065 Cone-Chr20:310857 Cone4ag2004 Cone-Chr4:13981446 7.20E-126 wgd
Cone4ag2004 Cone-Chr4:13981446 Cone7ag1901 Cone-Chr7:12185778 8.87E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1147 Blo01g01606 . Bda01g00475 . Bpe02g00339 . . Bma01g02379 . Cmo12g00350 . . . . Sed02g0076 . Cpe07g00354 Bhi04g00124 Tan02g2834 Cmetu03g0402 . Hepe10g0168 . Lcy13g1898 Cla08g01409 Cam08g1889 Cec08g1466 Cco08g1599 Clacu08g1581 . Cre08g1364 Cone4ag2004 Cone7ag1901 Cone17ag1418 Cone20ag0065 . . . . . Blo18g00771 Bda08g01210 Bda01g01540 Bpe02g01737 Bpe05g00148 Bma01g00719 Bma05g00180 . . . Cma12g00399 Cma05g00318 . . Cpe11g00266 . . . . . . . . . . . . . . . Lsi08g01305 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272