Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2006 ATGGCTCACGGTCGCGGTAGCAAGGAATCGTCTTCAGTAATAGATCGAAGAAGCGGATTTTGCAGAACCGATTCGGTGTTTTACAGTAAGCGTAAGCCCATCCCTCTCCCACCTAACCCATCTCTTGATGTCACCACATTCATCGCCTCCCAAGCTCATAATGGCAAGGTTGCCTTCATTGACGCTTCCACCGGCCACCACCTCACCTTTTCTGACCTCTGGAGAGCTGTTGACTCCGTCTCCGCCAGTCTTTCCGACATGGGCATTAGAAAAGGCCACGTCATCCTCCTCCTCTCTCCCAACACCATCTTCTTCCCCGTTATCTGTCTCGCCGTTATGTCTCTCGGCGCCATCATCACCACCACCAACCCTTTAAACACATCTCGAGAAATCGCGAAGCAAGTAGCTGATTCCAAGCCGGTACTCGCTTTCACGACTCAGCAACTTAGCCCTAAACTCGGCAGTTTGACTCTTCCCGTCGTCCTCATCGACGACGATACTGCTGCTGCTGCAGTTAATAATTCATCCAAAGCTAAAATCGTGTCCACGTTAGGGGAGATGATGAGGAAACAGACGAGTGGAAGCCGAGTTAGGGAACGAGTGAACCAGGATGACACGGCAACTCTGCTCTATTCATCGGGTACAACCGGGGCGAGTAAAGGTGTGGTGTCATCGCACAGGAACCTCATAGCGATGGTCCAAACCATTCTGAGCCGGTTCAATCTAGACGAGGGAGAGCAAACGTTCATCTGCACCGTTCCTATGTTCCACATCTACGGCCTAGCTGCCTTTGCCACTGGTCTACTCGCGTCTGGATCTACGATCGTGGTTTTGTCAAAGTTCGAGATCCATGAGATGCTGCTTGCGATTGAGAAGTACAGAGCAACTTACCTGCCGCTAGTACCGCCGATCCTGGTGGCGCTTGTGAACCACGCAGATCAGTTAAAGTCCAAGTACGATCTGAGTTCGCTACATTCGGTTCTGTCAGGTGGGGCCCCGCTTGGGAAGGAGATGATAGAGGGGTTCCTGGCCAAGTATTCGAGGGTGAAGATTCTTCAAGGTTACGGGTTGACTGAATCGACGGCTGTAGGGGCGTCCACGGACTCGCTGGAGGAGAGTAGGAGGTACGGCACGGCGGGGATGTTGTCGCCGAGAATGGAAGCCAAGATTGTGGACCCCGAGAGCGGTGAGGCTTTGGGGGTTAATGAAACGGGTGAGCTTTGGCTTAGAGGTCCCACCATAATGAAAGGTTATTTCGGTAATGTAGAGGCGACAACCTCTACACTTGATAAAGAGGGATGGCTAAGAACAGGTGATCTGTGCTACTTTGATGCTGATGGATTCATATTCGTGGTTGATAGATTAAAGGAACTGATTAAATACAAGGGATACCAGGTGCCCCCAGCAGAACTAGAGGCTTTGCTGCTTACTCATCCAGAAATTGACGATGCAGCAGTAATTCCGTACCCTGATAAAGACGTGGGGCAGTTTCCAATGGCATATGTCGTTAGAAAAGCTGGAAGCAGTATATCAGATAGTGCAGTAATGGAGTTCATAGCTAAACAGGTGGCTCCTTACAAGAAAATCCGGAAGGTGGCTTTTGTAGCTTCTATTCCCAAGAATCCTTCTGGCAAGATTCTTAGGAAGGATCTCATTAAGCTTGCTACCTCTAAACTTTGA 1680 50.12 MAHGRGSKESSSVIDRRSGFCRTDSVFYSKRKPIPLPPNPSLDVTTFIASQAHNGKVAFIDASTGHHLTFSDLWRAVDSVSASLSDMGIRKGHVILLLSPNTIFFPVICLAVMSLGAIITTTNPLNTSREIAKQVADSKPVLAFTTQQLSPKLGSLTLPVVLIDDDTAAAAVNNSSKAKIVSTLGEMMRKQTSGSRVRERVNQDDTATLLYSSGTTGASKGVVSSHRNLIAMVQTILSRFNLDEGEQTFICTVPMFHIYGLAAFATGLLASGSTIVVLSKFEIHEMLLAIEKYRATYLPLVPPILVALVNHADQLKSKYDLSSLHSVLSGGAPLGKEMIEGFLAKYSRVKILQGYGLTESTAVGASTDSLEESRRYGTAGMLSPRMEAKIVDPESGEALGVNETGELWLRGPTIMKGYFGNVEATTSTLDKEGWLRTGDLCYFDADGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEIDDAAVIPYPDKDVGQFPMAYVVRKAGSSISDSAVMEFIAKQVAPYKKIRKVAFVASIPKNPSGKILRKDLIKLATSKL 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 13992231 13995012 - Conep04aG0207100.1 Cone4ag2006 436984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2006 559 Gene3D - 457 558 IPR045851 -
Cone4ag2006 559 SUPERFAMILY Acetyl-CoA synthetase-like 44 557 - -
Cone4ag2006 559 CDD 4CL 36 551 - -
Cone4ag2006 559 Gene3D - 24 456 IPR042099 -
Cone4ag2006 559 FunFam Long-chain-fatty-acid--CoA ligase FadD 28 456 - -
Cone4ag2006 559 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 551 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
Cone4ag2006 559 ProSitePatterns Putative AMP-binding domain signature. 209 220 IPR020845 -
Cone4ag2006 559 Pfam AMP-binding enzyme C-terminal domain 470 545 IPR025110 -
Cone4ag2006 559 FunFam 4-coumarate--CoA ligase 2 457 558 - -
Cone4ag2006 559 Pfam AMP-binding enzyme 51 419 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0032 Cone-Chr16:199550 Cone4ag2006 Cone-Chr4:13992231 1.93E-155 dispersed
Cone16ag0978 Cone-Chr16:9705980 Cone4ag2006 Cone-Chr4:13992231 2.78E-138 dispersed
Cone1ag1387 Cone-Chr1:56700707 Cone4ag2006 Cone-Chr4:13992231 4.47E-20 dispersed
Cone3ag0722 Cone-Chr3:3690259 Cone4ag2006 Cone-Chr4:13992231 2.35E-148 dispersed
Cone4ag2006 Cone-Chr4:13992231 Cone8ag0733 Cone-Chr8:7361201 6.86E-151 dispersed
Cone8ag0512 Cone-Chr8:3651093 Cone4ag2006 Cone-Chr4:13992231 8.06E-155 transposed
Cone4ag2006 Cone-Chr4:13992231 Cone7ag1922 Cone-Chr7:12291893 5.05E-195 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2006 K10526 - cit:102606631 869.766