Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2018 ATGGCTGGGTCTGACGAGAACAACCCGGGTGTGATTGGACCCGCAAACCTTCATGGGGGCTTGGGCGCTGGAGGGGACAAATTTGTTCTGGGGATCGGCCAAAACCGCAGAGCACTTGGCATCCTCAGTAGCAACATAACTGGAACTCATCCTTATCCTTGTGCTGTCCAAAAGGGAGGCTCGTCAGAGAAGTTTGCCGCCCAGATGACAAGTAAGCCGCAACTACCACCCGAGGAAACTAAGAAACCAATCCAGTTGGTGCCTGCTCCAATTGTAGCTGAAGATTGCACCATTATAGATGTGGATGTCGAAAGTACAAGTAGCGATGTTCCAATGTTTGTGCAACACACAGAAGCGATGTTGGATGAAATTGATCGGATGGAGGAGGTAGAAATGGAAGACATAGCCGAGGAACCCGTTGTGGACATAGACGCTGGTGATAAAAGTAATCCACTTGCAGTTGTTGAGTACATTGATGATATATATGCCTACTACAGAAAGGCGGAGACTTGTAGTTGTGCGCCGCCAAACTATATGACTCTGCAATTGGATATTAATGAAAGAATGAGAGGCATTCTAATTGACTGGCTAATCGAGGTGCATTACAAGTTTGAACTGATGGAAGAGACATTGTACCTCACTGCTAACTTGATCGATAGATTCTTAGCCATTCAACCTGTTGTGAGGAAGAAGCTCCAGCTGGTAGGGGTCACGGCAATGCTTATTGCCTGCAAATATGAAGAAGTTTTTGTTCCAGTTGTGGATGATTTTATTGTGATTTCTGACAAGGCTTACACTAGACAACAAGTGCTCGAGATGGAAAAGTTGATGGTCAATAGCTTACAATTTAATCTCTCAGTTCCGACCCCTTACGTGTTTATGAGAAGGTTTCTGAAAGCAGCTCAATCAGACAAAAAACTGGAGTTGCTGTCGTTCTTCATGATGGAGCTATGCCTAGTAGAATATGAAATGCTAAAGCATGCACCGTCTCTGTTAGCTGCTGCTGCAATATTCACGGCTCAATGTTCAATTAGTGGATATCAACAGTGGAGCATGACCAGTGAGTGGCACACCATCTACTCAGAAAACCAGCTTTTGGAATGCTCGAAGATGATGGTATGTTTGCATCAAAAGGCAGGGACAGGGAAGCTGACAGGAGTTCACAGAAAGTACTCTACGTCCAAGTATGGCTATGCTGCTGCTACATCAGAGCCTGCTAACTTCCTGTTGGAGTGA 1236 45.31 MAGSDENNPGVIGPANLHGGLGAGGDKFVLGIGQNRRALGILSSNITGTHPYPCAVQKGGSSEKFAAQMTSKPQLPPEETKKPIQLVPAPIVAEDCTIIDVDVESTSSDVPMFVQHTEAMLDEIDRMEEVEMEDIAEEPVVDIDAGDKSNPLAVVEYIDDIYAYYRKAETCSCAPPNYMTLQLDINERMRGILIDWLIEVHYKFELMEETLYLTANLIDRFLAIQPVVRKKLQLVGVTAMLIACKYEEVFVPVVDDFIVISDKAYTRQQVLEMEKLMVNSLQFNLSVPTPYVFMRRFLKAAQSDKKLELLSFFMMELCLVEYEMLKHAPSLLAAAAIFTAQCSISGYQQWSMTSEWHTIYSENQLLECSKMMVCLHQKAGTGKLTGVHRKYSTSKYGYAAATSEPANFLLE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14050059 14053066 - Conep04aG0208300.1 Cone4ag2018 436996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2018 411 Gene3D - 174 286 - -
Cone4ag2018 411 PANTHER CYCLINS 138 392 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone4ag2018 411 SMART cyclin_7 195 279 IPR013763 -
Cone4ag2018 411 SMART cyclin_7 292 374 IPR013763 -
Cone4ag2018 411 Gene3D - 160 400 - -
Cone4ag2018 411 SMART Cyclin_C_2 288 405 IPR004367 -
Cone4ag2018 411 CDD CYCLIN_AtCycB-like_rpt1 137 283 - -
Cone4ag2018 411 FunFam G2/mitotic-specific cyclin-1 275 400 - -
Cone4ag2018 411 Pfam Cyclin, N-terminal domain 160 286 IPR006671 -
Cone4ag2018 411 SUPERFAMILY Cyclin-like 287 403 IPR036915 -
Cone4ag2018 411 SUPERFAMILY Cyclin-like 149 285 IPR036915 -
Cone4ag2018 411 Pfam Cyclin, C-terminal domain 288 404 IPR004367 -
Cone4ag2018 411 CDD CYCLIN_AtCycB-like_rpt2 288 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag2018 Cone-Chr4:14050059 Cone6ag1701 Cone-Chr6:12844184 4.73E-144 dispersed
Cone12ag0859 Cone-Chr12:7710310 Cone4ag2018 Cone-Chr4:14050059 3.71E-128 wgd
Cone17ag1451 Cone-Chr17:9849759 Cone4ag2018 Cone-Chr4:14050059 1.02E-161 wgd
Cone20ag0025 Cone-Chr20:155965 Cone4ag2018 Cone-Chr4:14050059 2.02E-139 wgd
Cone4ag2018 Cone-Chr4:14050059 Cone7ag1934 Cone-Chr7:12340108 3.09E-254 wgd
Cone4ag2018 Cone-Chr4:14050059 Cone8ag0889 Cone-Chr8:8686330 4.18E-136 wgd
Cone4ag2018 Cone-Chr4:14050059 Cone9ag1624 Cone-Chr9:11579755 2.82E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2018 K21777 - rcu:8273611 575.474