Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2020 ATGGACGATGATGATGGTCCCTCTTCACTATTTCCAATTGACGTTGAATTCGTCGATGAGCTTCTATTACAAGGGTGCTGGTTGGAAACCACAAATGGATCTGAATTCCCTCATCACAATCCTTTCAATTCAAGTGCACTCTTTGACCCTTGTCTTAGTTGGTCTGAAATGGAGACCGATTTAAGCACGAACCCACCTCCAAATAATGATGGAAATTATGAGATAAATGAACTCCAGGGGAGAAACACTAATAGTGCAACAACTGCTGATGAAACCAATCAGAGTATGCCTGATGTTGATACTTGGGAATTGGACAGAAGGTGGTGGATTGCACCCAGACCACATTCAGCGTCTTCTTCCGTGATAGACAGACTAATCAGAGCAATTGGATATATCAAAGATTTTGCAAGGGACGAAGATGTGCTGGTTCAAGCATGGGTGCCCGTAAGCAGAGGGAATAAGCGTGTTCTGATCACCCACAACTTACTTTTCTCCACGAACACGGCCTCCACAAGGCTTGCAAGGTACCGGGACATCTCTGTCAATTATCAATTCTCGGCTGACGAGGATTCTGAAGATGCAATGGGCTTGCCAGGTCGGGTCTTCTCGGGTCAGGTTATCGAGTGGAGTCCTGATGTTCGCCTCTTCAGAAATGATGAGTACCTGAGAGTTAATTACGCCCAAGAGTGCGATGTGCGTGGAACTCTAGCCCTTCCTGTCTTTGAACAGGGCAGTAGGACTTGCTTGGGTGTCATTGAAGTCATCATGACTACCCAGCAGATCAGATATCAACCTGAACTCGACAATATTTGCAAGGCTCTTGAGGCAGTTGCTCTTCGGAGCTCTGATGTTGTGCACACTCCAATTGTTAAGGCACCTAACCGATCCTATGAAGCTGTAGTACCAGAGATTCAAGATGTGTTAAGATTTGCCTGCGAGACGCATAGATTGTCCCTAGCACAATCATGGGTATCATGCCTCCAACAAGGTAGGAAGGGTTGTCGCAACTCTGATGGGAACTACATTCATTGTGTTTCTACCGTAGATCGGGCTTGCTATGTAGCTGATCCCTGTTTTCAGGGTTTCCACGAGGCCTGCTCCGAGCATCATTTGTTGAAAGGTCAAGGCGTTGCTGGCTCTGCATTTAACTCTAACCAACTCTGCTTCTCCACTGACATTACATTCTTCGGCAACACAGAATATCCTCTCTCTCACCTTGCAAGGATGTTTGACTTGCATGCTGCTGTTGCAATACGTCTCCGCAGCATTCATACCAGTAAGGCTGACTTTGTGCTCGAGTTTTTCCTGCCTGTGGACTGCAAGGATCCCGAAGAGCAGAAAAAGATGCTCTCTTCATTGTCCATCATCGTACAACAATATTGCCGGAGCTTACGGGTTATAACAGACAAGGAACTCCAGGAGGAAAGTGACAACCTGCCTTTAAAATTAGATGATGTAGTACAAGTCCCTTCAGAGGTTATGAATCTTCCGGAAGATTCCTGCTACACTTCCTGTGATGCTGAGATCCAACAGCATGACGGTTCTGTCTCGTTGCTGCCTGAGGGTGTTTCCGGGGAAGCCCTGGCCAAAAAATCATCTGGGACTGGCAAACATCATGAAGATTCCAAGCTGAAAGGAACCATTGAGTGCAGTGAAGAGTGCTCAACTTTTGATGAAGGTAAGCTGTCAAATTCGAGTGTGGGGAAAAAGAGGGAGAAAAGTGGTACAAAGGCGGAGGAAACAATCACCGTACAAGTTCTTCGCAAGTACTTTGCTGGTAGCCTAAAGGACGCCGCAAAGAGCCTTGGAGTTTGTCCAACAACACTGAAAAGGATATGCCGTCAACATGGGATTAAAAGATGGCCTTCTAGGAAAATCAAGAAGGTTGGACATTCGTTGCAGAAACTCCAGCTTGTCATAGACTCCGTCCAAGGTGCATCCGGTGCTTGTCAAATCAGTTCCCTACTTACGGACTTGGCAGAGCTGGCCTCTGCTCCTAATCCATCAGGAACTGGAACCCCCCAACTTATAACTTCAGAGATGGGTGATTATCCCAAAACATCACCCATTGTGCCTGAAGGGGGCATGATATTCTCCCATTCCCCAGGACTTGCATCAAACTCCCACTCATGCTCATGCACTCATAGCTCCTGTTCCAGCTGCGACCAACAGTATCTAATCCTGTGGGATGATTCCGATCCAGCAATGGGAGAAAACTCTGTGGGTGATAAGTTGAAGCTTAAGAGGGCCAAAAGTGATGAAGAGCTACATGTCTCAAGTAGACGAGGAATTAATCCCCTGCGAAAATCTCATAGCCAGAAAAGCCTAGCTGAGTGCCCAGGTGAGAGGGTTGCCCACTTGCCAAAAATGCCGAGTGAGAAAGATGATGTTCAGAGAGTAAAAGTAAAATATGGAGATGTAAGAATCCGGTTTCGGATGCATGGTAGTTGGGGGTTTACAGATTTGGTAGAAGAAGTGGGAAGGCGGTTTGATATCAGAGACATAAGTAAGTATGATGTCACATACTTGGATGATGACTCCGAATGGGTGTTATTGACATGCGATGCTGATTTGGAGGAGTGTATTGATGTGAGTAGATCGTCCCGGAGCGGTATAATCAAACTTTCTCTCCATCCATCTCGTCACAATGTAAGAAGTTAA 2661 46.26 MDDDDGPSSLFPIDVEFVDELLLQGCWLETTNGSEFPHHNPFNSSALFDPCLSWSEMETDLSTNPPPNNDGNYEINELQGRNTNSATTADETNQSMPDVDTWELDRRWWIAPRPHSASSSVIDRLIRAIGYIKDFARDEDVLVQAWVPVSRGNKRVLITHNLLFSTNTASTRLARYRDISVNYQFSADEDSEDAMGLPGRVFSGQVIEWSPDVRLFRNDEYLRVNYAQECDVRGTLALPVFEQGSRTCLGVIEVIMTTQQIRYQPELDNICKALEAVALRSSDVVHTPIVKAPNRSYEAVVPEIQDVLRFACETHRLSLAQSWVSCLQQGRKGCRNSDGNYIHCVSTVDRACYVADPCFQGFHEACSEHHLLKGQGVAGSAFNSNQLCFSTDITFFGNTEYPLSHLARMFDLHAAVAIRLRSIHTSKADFVLEFFLPVDCKDPEEQKKMLSSLSIIVQQYCRSLRVITDKELQEESDNLPLKLDDVVQVPSEVMNLPEDSCYTSCDAEIQQHDGSVSLLPEGVSGEALAKKSSGTGKHHEDSKLKGTIECSEECSTFDEGKLSNSSVGKKREKSGTKAEETITVQVLRKYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGACQISSLLTDLAELASAPNPSGTGTPQLITSEMGDYPKTSPIVPEGGMIFSHSPGLASNSHSCSCTHSSCSSCDQQYLILWDDSDPAMGENSVGDKLKLKRAKSDEELHVSSRRGINPLRKSHSQKSLAECPGERVAHLPKMPSEKDDVQRVKVKYGDVRIRFRMHGSWGFTDLVEEVGRRFDIRDISKYDVTYLDDDSEWVLLTCDADLEECIDVSRSSRSGIIKLSLHPSRHNVRS 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14057012 14060986 + Conep04aG0208500.1 Cone4ag2020 436998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2020 886 PANTHER PROTEIN NLP8 79 879 IPR045012 GO:0003700(InterPro)
Cone4ag2020 886 Gene3D - 794 880 - -
Cone4ag2020 886 Pfam RWP-RK domain 582 629 IPR003035 -
Cone4ag2020 886 Pfam NLP protein GAF domain 293 465 IPR055081 -
Cone4ag2020 886 MobiDBLite consensus disorder prediction 57 76 - -
Cone4ag2020 886 SUPERFAMILY CAD & PB1 domains 791 883 - -
Cone4ag2020 886 CDD PB1_NLP 799 879 IPR034891 -
Cone4ag2020 886 ProSiteProfiles PB1 domain profile. 797 880 IPR053793 -
Cone4ag2020 886 Pfam PB1 domain 799 879 IPR000270 GO:0005515(InterPro)
Cone4ag2020 886 SMART PB1_new 797 880 IPR000270 GO:0005515(InterPro)
Cone4ag2020 886 ProSiteProfiles RWP-RK domain profile. 564 649 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag2020 Cone-Chr4:14057012 Cone9ag0876 Cone-Chr9:4266120 8.16E-129 dispersed
Cone12ag1273 Cone-Chr12:9744882 Cone4ag2020 Cone-Chr4:14057012 1.32E-156 wgd
Cone20ag0023 Cone-Chr20:143717 Cone4ag2020 Cone-Chr4:14057012 3.92E-177 wgd
Cone3ag1247 Cone-Chr3:31282019 Cone4ag2020 Cone-Chr4:14057012 6.47E-190 wgd
Cone4ag2020 Cone-Chr4:14057012 Cone7ag1936 Cone-Chr7:12353709 0 wgd
Cone4ag2020 Cone-Chr4:14057012 Cone8ag1327 Cone-Chr8:10741156 1.60E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46082 None None None None Cone TF