Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2026 ATGGTTCTCTTTTTCAATTGGGCGATCAAGCAGCCATCAATACCTAAAGATACATGTAGTTACCACATAATTATCAGATCCTTGGGCAGAAGAAAGTTTTTCAAATTTATGATGGAACTTCTTCAGGACATGAGAAGGGAAGGAGTTGGTGCAAATATAGAGACCCTATCCATTGTGATGGACAGTTTCATAAGGGCACACCAAATTTCTAAAGCTGTCCAAATGTTTGGCAACTTGGAAGAATTTGGGTTGAAATGTGACGCCGAGTCCTTGAACATTCTGCTACAACATTTGTGTCATCGATCCCATGTTGGCACTGCAAATTCATTCTTTTACTCAATGAAGGGGAGGATCTGTTTCAATATAATGACATATAACATTATGGTTGGTGGATGGTCAAGATATGGCAAAGTTAGTGAAATTGAGCGGATTCTGAAAGCAATGGAAGCAGATGGACTTTATCCTGATTGTTTAACTTTCACCTACCTTCTTGAGGGTCTAGGCAGAGCTGGTCTTACTGATGTTGCTGTTGAGATTTTTGACAAAATGAAGGGGAAAGGTTGTGTCCCAGACGCTGGGGCATACAATGCTATGCTCTCAAATTTTCTATCAGTTGAAAATATTGATGAATGCATGAGGTATTACAAGCAAATGTTGAGTAATCAATGTGACCCAAACATTGATACTTATGCCAAATTAGTTACTGCCTTGCTTAAGATGCGAAAAGTTGCTGATGCACTCGAACTGTTTGATGAGATGCTGGAAAGAGGAGTGATACCAACTATGGGGATGATAACATCCTTCGTCAAACTTTTGTGCAGCTATGGTCCACCACATGCTGCCATGATGATTTACAAGAAGGCAAGAAAAGCTGGATGTAGAATATCTGAGAGTGCTTATAAGTTATTGCTTATGCGACTTTCCCAGTTTGGTAAATGTGGAATGCTGTTAAACATATGGGATGAGATGCAGGGATGTGGTTATTCTGTGGATGTGGAAGCCTATGAGTATGTCATTAATGGGCTTTGCAACATAGGGCAGCTTGAGAATGCTGTTCTTGTCATGGAGGAGTGCTTGCGTCATGGCTTTTGTCCAAGCAGGCTCATATGTAGCAAACTAAATAACAAACTACTTGCTTCGGAAAAGGTACAGATGGCCTACAGGTTGTTTCTGAAGATCAAACATGCCCGTCACAATGAAAACATGCGGAGAAACTGGCGTGCCAGGGGTTGGCATTTTTGA 1242 40.9 MVLFFNWAIKQPSIPKDTCSYHIIIRSLGRRKFFKFMMELLQDMRREGVGANIETLSIVMDSFIRAHQISKAVQMFGNLEEFGLKCDAESLNILLQHLCHRSHVGTANSFFYSMKGRICFNIMTYNIMVGGWSRYGKVSEIERILKAMEADGLYPDCLTFTYLLEGLGRAGLTDVAVEIFDKMKGKGCVPDAGAYNAMLSNFLSVENIDECMRYYKQMLSNQCDPNIDTYAKLVTALLKMRKVADALELFDEMLERGVIPTMGMITSFVKLLCSYGPPHAAMMIYKKARKAGCRISESAYKLLLMRLSQFGKCGMLLNIWDEMQGCGYSVDVEAYEYVINGLCNIGQLENAVLVMEECLRHGFCPSRLICSKLNNKLLASEKVQMAYRLFLKIKHARHNENMRRNWRARGWHF 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14079141 14081795 + Conep04aG0209100.1 Cone4ag2026 437004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2026 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Cone4ag2026 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 17 51 IPR002885 -
Cone4ag2026 413 Gene3D Tetratricopeptide repeat domain 112 183 IPR011990 GO:0005515(InterPro)
Cone4ag2026 413 Gene3D Tetratricopeptide repeat domain 184 256 IPR011990 GO:0005515(InterPro)
Cone4ag2026 413 Pfam Pentatricopeptide repeat domain 143 201 IPR002885 -
Cone4ag2026 413 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 4 397 - GO:0003729(PANTHER)
Cone4ag2026 413 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515(InterPro)
Cone4ag2026 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Cone4ag2026 413 Gene3D Tetratricopeptide repeat domain 275 412 IPR011990 GO:0005515(InterPro)
Cone4ag2026 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Cone4ag2026 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Cone4ag2026 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Cone4ag2026 413 Pfam PPR repeat 337 363 IPR002885 -
Cone4ag2026 413 Pfam PPR repeat 20 49 IPR002885 -
Cone4ag2026 413 Pfam PPR repeat 229 258 IPR002885 -
Cone4ag2026 413 SUPERFAMILY HCP-like 162 294 - -
Cone4ag2026 413 NCBIfam pentatricopeptide repeat 159 192 IPR002885 -
Cone4ag2026 413 NCBIfam pentatricopeptide repeat 55 88 IPR002885 -
Cone4ag2026 413 NCBIfam pentatricopeptide repeat 20 52 IPR002885 -
Cone4ag2026 413 NCBIfam pentatricopeptide repeat 194 226 IPR002885 -
Cone4ag2026 413 NCBIfam pentatricopeptide repeat 229 261 IPR002885 -
Cone4ag2026 413 NCBIfam pentatricopeptide repeat 124 157 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2026 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g80 . . . . . . . . . . . . . . . Cpe06g00015 . . . . . . . . . . . . . . . Cone4ag2026 . . . Lsi04g01817 Csa04g02714 . . . . . . . . . . . . Cmo09g00047 . . . Car09g00037 . . Bhi09g02856 . . . . . . . . . . . . . . . Chy07g00403 Cme07g00045
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006076 1 11 1 1 1 0 1 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 1 1 1 1 2 4 1 36