Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2030 ATGAGTTCAATTTGTTTTATTTTTTCGCTCTTCATTTATTCTTCATTGCTGTGTTATGGATTTGGTGGGAATACTTCTGTGAGAGCGCCACCCCCCGTTGTTAAGATCGGAGCTCTTTTCTCGTTTGAATCCACCATTGGAAAAGTCTCCAAGATTGCTATTGATGAAGCCGTGAAAGATGTTAATTCCAATTCCAGCATCCTCCCTCAAACAAAGCTTGTTATATCCATGCGAAATTCCAATTGCACTGGCTTTTATGGGATGGTCGAAGCCCTGCACTTCATGAAGACTGAAACAGTAGCCATCATAGGCCCTCAATCTTCTGTCGTTTCGCATACTGTATATCATGTTGCAAATGAACTCCAAGTTCCCCTATTGGCATTTGCAGCTACAGACCCAACTCTCTCTTCCCTTCAGTTCTCTTTCTTTGTTGGCACGACGCAAAGTGATTTCTTCCAAATGACTGCTGTGGCTGAGTTTGTTGATCATTTTGGTTGGAAGGCAGTCATTGCAATTTTCATTGATGATGATTATGGCCGGAATGGTGTTGCTGCATTAGAGGATGAGCTCTCTGAAAGGCAATGTAGAATCTTCTATAAGGCGGGAATCAGCCCAGACTCTGGAGCTACTCGGGGTGACATTATTGATCTCCTTGTAAAGGTTTCAATGATGGAATCTCGAGTTGTCGTTCTCCAAGTAAATTCCAACTCGGGTTTCTTGGTTTTTACAGTGGCTAAATACCTTGGAATGATGGGTAATGGGTATGTATGGATAGCTACCGATTGGCTCTCCTCTGTTTTAGATTCTGCCCCCCCTCTCTCTTCTGAAACCATGGATTCAATGCAAGGGATTATTGTTCTGCGCCAGCACACACCGGATTCAGACAGAAAGAGAGCTTTCTTGTCCAAGTGGAACAAGTTAACTGGTGGTTCTGTGGGGCTGAATTCTTATGGTCTTTATGCTTATGATTCTGTTTGGCTGGTTGCTCATGCTCTTGATGAATTTTTTAAACAGGGTGGTATCATTTCATTTTCTAATGATTCCAGGATACATTCGGTTGAAGGCGGTGGTCTTCACCTTGAAGAAATGTTCATATTTGATGGGGGAATGCTTCTGCTGAAGAATATACTACAGAGTAACCTCGTGGGTTTGACTGGTCCGATCAAGTTTAATTCAGATGGGTCTCTCATGCTTCCAGCATATGATATCTTGAATGTGATAGGGACTGGGATCCTTCGGGTTGGTTACTGGTCCAACTATTCGGGTTTATCAACTGTTGCTCCAGAGACACTCTATAGCAGGCCACCTAATCGCTCAAGTGCAAACCAGAAACTATACAGCGTAATCTGGCCCGGAGAGACATTGGTGAAGCCCCATGGATGGGGTACTGATATGTTCAAGGGTTTTTGCATTGACGTATTTACAGGGGCTGTAAACCTTCTACCACATGCTGTTCCATATCGATTTATCCCCTTTGGAGATGGTCTTAATAACCCTAGCTACACAGAGCTTGTGAATTTGATCACCACCGATTTCTTTGATGCTGTGGTAGGTGACATCGCCATTGTCACAAACAGGACAAAGATCGTGGATTTCACTCAGCCATATGCTGCATCTGGGCTTGTTGTCGTGGCTCCATTTAAAAAGCTGAACACTGGTGCTTGGGCTTTCCTAAGACCATTCTCTCCATTCATGTGGACTGTCACTGCTATTTTGATCATTGTTATTGGGATTTTTGTATGGATTCTGGAACATATGATTAATGACGAATTCAGGGGCCCACCTAAGCGGCAATTATTAACTCTTTTGTGGTTTAGCTTCTCCACCCTATTTTTTGCTCATAGAGAAAATACAGTGAGCACACTGGGTCGAATGGTGCTGATCATATGGCTGTTTGTGGTATTGATAATCAACTCCAGCTACACTGCGAGTCTAACATCAATTCTGACAGTGCAGCAGCTCTCTTCTCTAATTACAGGAATCAACAGCTTGAAATTGAATGAGGATCCGATTGGATATCTAGCGGGATCTTTTGCTGAATATTATTTGAGTGAGGAGTTCAACATTTCCAAATCAAGACCTGTTCCTCTAGGATCACCTGAAGCTTATGCTAGGGCTTGA 2121 43.05 MSSICFIFSLFIYSSLLCYGFGGNTSVRAPPPVVKIGALFSFESTIGKVSKIAIDEAVKDVNSNSSILPQTKLVISMRNSNCTGFYGMVEALHFMKTETVAIIGPQSSVVSHTVYHVANELQVPLLAFAATDPTLSSLQFSFFVGTTQSDFFQMTAVAEFVDHFGWKAVIAIFIDDDYGRNGVAALEDELSERQCRIFYKAGISPDSGATRGDIIDLLVKVSMMESRVVVLQVNSNSGFLVFTVAKYLGMMGNGYVWIATDWLSSVLDSAPPLSSETMDSMQGIIVLRQHTPDSDRKRAFLSKWNKLTGGSVGLNSYGLYAYDSVWLVAHALDEFFKQGGIISFSNDSRIHSVEGGGLHLEEMFIFDGGMLLLKNILQSNLVGLTGPIKFNSDGSLMLPAYDILNVIGTGILRVGYWSNYSGLSTVAPETLYSRPPNRSSANQKLYSVIWPGETLVKPHGWGTDMFKGFCIDVFTGAVNLLPHAVPYRFIPFGDGLNNPSYTELVNLITTDFFDAVVGDIAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNTGAWAFLRPFSPFMWTVTAILIIVIGIFVWILEHMINDEFRGPPKRQLLTLLWFSFSTLFFAHRENTVSTLGRMVLIIWLFVVLIINSSYTASLTSILTVQQLSSLITGINSLKLNEDPIGYLAGSFAEYYLSEEFNISKSRPVPLGSPEAYARA 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14092024 14094685 + Conep04aG0209500.1 Cone4ag2030 437008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2030 706 Gene3D - 553 693 - -
Cone4ag2030 706 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 705 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone4ag2030 706 SUPERFAMILY Periplasmic binding protein-like I 29 460 IPR028082 -
Cone4ag2030 706 CDD PBP1_GABAb_receptor_plant 35 427 IPR044440 -
Cone4ag2030 706 Gene3D - 149 423 - -
Cone4ag2030 706 Pfam Receptor family ligand binding region 51 408 IPR001828 -
Cone4ag2030 706 FunFam Glutamate receptor 554 684 - -
Cone4ag2030 706 FunFam Glutamate receptor 452 554 - -
Cone4ag2030 706 FunFam Glutamate receptor 149 304 - -
Cone4ag2030 706 Gene3D - 440 552 - -
Cone4ag2030 706 Gene3D - 52 398 - -
Cone4ag2030 706 Pfam Ligand-gated ion channel 565 668 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone4ag2030 706 SUPERFAMILY Periplasmic binding protein-like II 462 702 - -
Cone4ag2030 706 SMART GluR_14 447 656 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag2030 Cone-Chr4:14092024 Cone7ag1635 Cone-Chr7:11055723 1.72E-122 dispersed
Cone12ag0877 Cone-Chr12:7816693 Cone4ag2030 Cone-Chr4:14092024 7.71E-304 wgd
Cone4ag2030 Cone-Chr4:14092024 Cone7ag1943 Cone-Chr7:12394537 3.48E-160 wgd
Cone4ag2030 Cone-Chr4:14092024 Cone8ag0908 Cone-Chr8:8803388 3.83E-297 wgd
Cone4ag2030 Cone-Chr4:14092024 Cone8ag1337 Cone-Chr8:10774452 7.32E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2030 K05387 - mdm:103436744 1024.62