Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone4ag2036 ATGACTTTGTCTTCAGTTTGTAATGTACTCCTCTTTACTTGCTGCGTCTCTAGTATTGCTTATACGACATATGGGCAGGATTTTTCCATCTTGGGCTACTCACCGGATGACTTGACCTCCGTTAACCGGCTGATTGAGCTATTCGAATATTGGATGACAGAACATGGGAAGATTTACGAGACTCTTGAAGACAAGCTCTACAGATTCGAAATTTTTAAGGACAATCTGAAACACATTGACGAGACGAACAAAAAAGTAAGCAACTATTGGCTTGGACTGAATGAGTTGTCTGATTTGAGCTATGAAGAGTTCAGAAATAGATATCTTGGTTTGAAAGCTGATCAGTTGCCTAAAAGGAGGGCGAAAGCTCCTGATCACCAAGAATTTTGGAGTTATAGATCGGACAATAATGCAGTGGACTTGCCCAAATCTATGGATTGGAGGAAAAAAGAAGCTGTCACTCCCGTCAAGAATCAAGGTTCATGTGGTAGTTGCTGGGCATTTTCAACGGTAGCAGCAGTAGAGGGCATAAATAAGATAATGACAGGAAACTTGACATCCTTGTCCGAACAGGAATTGATTGATTGTGACAGACCCGACAACAATGGATGTAATGGAGGTCTAATGGATTACGCGTTTTCCTTCATAATCTCAAATGGTGGACTTCACAAGGAGGAAGACTACCCTTATCTCATGGAGGAAGGCACTTGTGAAATGATCAAAACGGGAGAAGCAGAGGTTGTGAGCATAAGTGGGTATCATGACATACCTGCGAACAATGAGGAGATGCTCCTGAAGGCACTTGCCAACCAACCCGTCAGCGTTGCAATAGAGGCTTCTGCTAGAGATTTCCAATTCTACAGAGGGGGCGTGTTTGATGGACATTGTGGAAGCCGGCTTGATCATGGAGTGACAGCCGTCGGATATGGCTCATCCAAGGGCTTAGATTACATCATCTTGAAGAATTCATGGGGGCCCAAATGGGGAGAGAAAGGATACATAAGGATGAAGAGGAATACTGGAAAGGCTGAGGGCCTTTGTGGGATCAATAAGATGGCTTCTTATCCAACTAAAAATTAA 1080 43.33 MTLSSVCNVLLFTCCVSSIAYTTYGQDFSILGYSPDDLTSVNRLIELFEYWMTEHGKIYETLEDKLYRFEIFKDNLKHIDETNKKVSNYWLGLNELSDLSYEEFRNRYLGLKADQLPKRRAKAPDHQEFWSYRSDNNAVDLPKSMDWRKKEAVTPVKNQGSCGSCWAFSTVAAVEGINKIMTGNLTSLSEQELIDCDRPDNNGCNGGLMDYAFSFIISNGGLHKEEDYPYLMEEGTCEMIKTGEAEVVSISGYHDIPANNEEMLLKALANQPVSVAIEASARDFQFYRGGVFDGHCGSRLDHGVTAVGYGSSKGLDYIILKNSWGPKWGEKGYIRMKRNTGKAEGLCGINKMASYPTKN 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14124480 14125997 + Conep04aG0210100.1 Cone4ag2036 437014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone4ag2036 359 Pfam Papain family cysteine protease 141 357 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone4ag2036 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Cone4ag2036 359 SUPERFAMILY Cysteine proteinases 44 357 IPR038765 -
Cone4ag2036 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 350 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cone4ag2036 359 Gene3D Cysteine proteinases 27 359 - -
Cone4ag2036 359 SMART Inhibitor_I29_2 48 104 IPR013201 -
Cone4ag2036 359 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Cone4ag2036 359 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone4ag2036 359 PRINTS Papain cysteine protease (C1) family signature 159 174 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone4ag2036 359 PRINTS Papain cysteine protease (C1) family signature 317 323 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone4ag2036 359 FunFam cysteine protease XCP2 27 359 - -
Cone4ag2036 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 159 170 IPR000169 -
Cone4ag2036 359 CDD Peptidase_C1A 142 356 IPR039417 -
Cone4ag2036 359 SMART pept_c1 141 357 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone4ag2036 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 317 336 IPR025661 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone4ag2036 K16290 - - gmx:100788466 537.724
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag2036 Cone-Chr4:14124480 Cone6ag1416 Cone-Chr6:11377080 2.79E-117 dispersed
Cone12ag1288 Cone-Chr12:9833913 Cone4ag2036 Cone-Chr4:14124480 2.35E-177 wgd
Cone3ag1253 Cone-Chr3:31375442 Cone4ag2036 Cone-Chr4:14124480 1.11E-101 wgd
Cone4ag2036 Cone-Chr4:14124480 Cone8ag1342 Cone-Chr8:10793398 8.36E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g53 . . . . . . . . . . . . Car01g01605 . . . . . . . . . . . . . . . . . . Cone4ag2036 . . . Lsi04g01835 Csa04g02733 . . . . . . . . . . . Cmo01g02094 . . . . . . Cpe02g00017 Bhi09g02835 Tan01g5151 Cmetu07g1435 . Hepe01g2364 Mch11g0035 . Cla11g01846 Cam11g1913 Cec11g1938 Cco11g1951 Clacu11g2077 Cmu11g1882 Cre11g2290 . . . Cme07g00030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54