Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0020 ATGGCTTTAGACGCTGTAATTTTCCAACAAGACCCATTTGGTAATTATACTGGAACTGGGAACAAAGATCTCTACAGCTTGTTGGGATCATCATCAGGAAACTGGGTCTATGATCAGGACGACTACTTTAGCCTGGAAATACAAGATCAAGTTCAAGATCATCACCAGATTATTAACTCATTTGATTTTCTCGGGAACCAAACTGGAAAGGGCTCTCCGACTTATGGAGATCATAGTAGTTGGTCCATTCTTAACAACCCCACAGACACACATGCAACAGCGGTCGATGCATCAACAATTACATATACCATGCAAACTAATAGTGGTACTAGTACTACAGCAACAACAACTACTTGTAGCACTGCTACTCCAGTTCGTCCAAGACGGCGTCGTATCAAAAGCCGGAAAAACCAAGAAGAAATCGAGAATCAAAGAATGACCCACATTGCTGTTGAACGCAACCGCAGAAAACAAATGAACGAGTATCTCTCTATGCTTCGCTCTTTAATGCCTGATTCTTACGTCCAAAGGGGCGACCAAGCATCAATAATAGGAGGTGCCATTAACTTTGTGAAAGAGCTAGAGCAACAAGTACAGTTTCTTGGTGCTCAGACGGAACTAATGACAAAGATGGCCGGTACTAATTCGGATCAAAGTGGTGAAGGGTCTAATTTTGTGCCATTTTCCGAATTCTTCACCTTCCCGCAGTATTCAACAGGAATTAGCAGCAACTCAAGTAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATACAGACATAGAAGTGAGCTTGGTAGAGAGCCATGCAAACCTTAAAATAAGGTCAAAAAGGCGGCCTAAACTGCTTTTGAAGATGGTTTCTTGGTTGACTAGTTTGCGCCTCACCGTTCTTCATCTGAATGTCACTACTCTGCATCAATTTGTGCTTTATTCATTCAGTGTCAAGGTAGAGGATGACTGTGGGATGAGTTCAGTGGATGAAATTGCTACCGCTTTGCATCAATTGCTAAGTAGAATTCAAGAAGAAGCATTTCTTTGA 1059 40.7 MALDAVIFQQDPFGNYTGTGNKDLYSLLGSSSGNWVYDQDDYFSLEIQDQVQDHHQIINSFDFLGNQTGKGSPTYGDHSSWSILNNPTDTHATAVDASTITYTMQTNSGTSTTATTTTCSTATPVRPRRRRIKSRKNQEEIENQRMTHIAVERNRRKQMNEYLSMLRSLMPDSYVQRGDQASIIGGAINFVKELEQQVQFLGAQTELMTKMAGTNSDQSGEGSNFVPFSEFFTFPQYSTGISSNSSSNSNSNSNSNSNSNSNSNTDIEVSLVESHANLKIRSKRRPKLLLKMVSWLTSLRLTVLHLNVTTLHQFVLYSFSVKVEDDCGMSSVDEIATALHQLLSRIQEEAFL 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 133301 134773 - Conep05aG0002000.1 Cone5ag0020 437038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0020 352 Gene3D - 129 210 IPR036638 GO:0046983(InterPro)
Cone5ag0020 352 SMART finulus 149 200 IPR011598 GO:0046983(InterPro)
Cone5ag0020 352 MobiDBLite consensus disorder prediction 108 124 - -
Cone5ag0020 352 MobiDBLite consensus disorder prediction 108 130 - -
Cone5ag0020 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 209 IPR036638 GO:0046983(InterPro)
Cone5ag0020 352 PANTHER MAX DIMERIZATION, MAD 98 347 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone5ag0020 352 Pfam Helix-loop-helix DNA-binding domain 144 195 IPR011598 GO:0046983(InterPro)
Cone5ag0020 352 MobiDBLite consensus disorder prediction 243 263 - -
Cone5ag0020 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 194 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0528 Cone-Chr20:2865702 Cone5ag0020 Cone-Chr5:133301 2.74E-67 dispersed
Cone4ag0399 Cone-Chr4:1815296 Cone5ag0020 Cone-Chr5:133301 5.75E-38 dispersed
Cone5ag0020 Cone-Chr5:133301 Cone7ag1260 Cone-Chr7:9361322 1.48E-62 dispersed
Cone10ag0749 Cone-Chr10:3791513 Cone5ag0020 Cone-Chr5:133301 3.42E-70 wgd
Cone3ag0750 Cone-Chr3:3894037 Cone5ag0020 Cone-Chr5:133301 7.49E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46084 PF00657 Lipase_GDSL 3.10E-46 CL0264 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0020 - - - 0.0