Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0021 ATGATACTACCTATAATGAACTCCTCCATTTCCAAGATTCTAATCAATAGCAGCCGGCAGAACATTTATGCTGCACTGAGCAGCCATGTCGTCGTCACCTTTTCCCTTTTCGTTTTCTTTTTCCTCGCTCTTCTCTCGCCGGTCGGAGCTCAACCTACTCCTGACGCTAACCTCGATTCGTATCAGTACAAGTTTAGCCCCTCCATGGCGGTCATCGTTGTGATCCTGATCGCCGCACTTTTCTTCATGGCATTCTTCGCCTTCTACATCCGCCACTGCTCCGATTCACATTCCGTCGGAAACAGCATCCGAAATCTCGCCGGCAGATCCAGACGCGGGATGCGTGGCCTCGATCCGAGCGTGATCGAGACGTTCCCCACCTTGGTCTACTCCGCTGTCAAAGAGCACAAGGTCGGCAAAGGTGCGTTAGAATGTGCTGTCTGCTTAAACGAATTCGAGGACGATGAAACGCTGCGTTTACTGCCCAAGTGCGACCACGTTTTCCACCCTGAATGCATCGATGCTTGGTTGGGGTCCCACACTACGTGTCCAGTTTGCAGAGCCAACTTGTCGCCCGATCAGTCCGGCGAGTCTGGGAACCAACTCGCCGACTCTAACACCGAATTGGACCTCGAATCACAAAACGACACTGTACCGCCCACCGGAGAACCTCAGCAGCATCTACAAGAAGAGGAAGAGCAACCACAAGCAGTAGAAGCTCAGGTTCTGAATCGAAGCCGTACGCGCGGACGGTCTAGATCAAGCCGGATACGGCGGGTGTTCCCTCGGTCAAATTCCACCGGTCATTCATTGGTTCAACCGGGCGAGTGTACAGAACGGTTCACTTTAAGATTACCGGTTGAGATAAGGAAGCAGATAATGAACAGGAAGCTAAATCGGGCCACTAGCATGGTGGTGCTGCCTAGGGAAAGTAGTTCGAGAAGAGGGGGCGTAAACGGTGGAGATGGGGAGGGTAGTAGTAGAGGGAGATCCTACAGACGGCTTAAGAGCCTGGAGCCAAGAGTGAAGTCGGAGCGGTGGGTTCTGTCGAAAACAGCGCCGTTTCTCATGAGAATGTTGTCGATGAAGTCGCCCTCGCCGAAGGGGACGAGTAGTAATGCGGAGGAGAGAGATGGTGGACAGGGGGGTAAAGCGAGTGAACCAGGTCGACCTCCCGTTTAA 1182 53.13 MILPIMNSSISKILINSSRQNIYAALSSHVVVTFSLFVFFFLALLSPVGAQPTPDANLDSYQYKFSPSMAVIVVILIAALFFMAFFAFYIRHCSDSHSVGNSIRNLAGRSRRGMRGLDPSVIETFPTLVYSAVKEHKVGKGALECAVCLNEFEDDETLRLLPKCDHVFHPECIDAWLGSHTTCPVCRANLSPDQSGESGNQLADSNTELDLESQNDTVPPTGEPQQHLQEEEEQPQAVEAQVLNRSRTRGRSRSSRIRRVFPRSNSTGHSLVQPGECTERFTLRLPVEIRKQIMNRKLNRATSMVVLPRESSSRRGGVNGGDGEGSSRGRSYRRLKSLEPRVKSERWVLSKTAPFLMRMLSMKSPSPKGTSSNAEERDGGQGGKASEPGRPPV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 143141 144388 + Conep05aG0002100.1 Cone5ag0021 437039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0021 393 MobiDBLite consensus disorder prediction 191 224 - -
Cone5ag0021 393 SMART ring_2 145 186 IPR001841 -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 191 273 - -
Cone5ag0021 393 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Cone5ag0021 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 51 326 - -
Cone5ag0021 393 SUPERFAMILY RING/U-box 138 193 - -
Cone5ag0021 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 193 IPR013083 -
Cone5ag0021 393 Pfam Ring finger domain 144 187 IPR001841 -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 308 337 - -
Cone5ag0021 393 FunFam E3 ubiquitin-protein ligase ATL6 105 193 - -
Cone5ag0021 393 CDD RING-H2_EL5-like 144 187 - -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 356 393 - -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 259 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0021 K10664 - - csv:101212548 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0748 Cone-Chr10:3779653 Cone5ag0021 Cone-Chr5:143141 4.26E-119 dispersed
Cone17ag1200 Cone-Chr17:8765006 Cone5ag0021 Cone-Chr5:143141 6.27E-65 dispersed
Cone4ag0442 Cone-Chr4:1981749 Cone5ag0021 Cone-Chr5:143141 1.83E-15 dispersed
Cone5ag0021 Cone-Chr5:143141 Cone7ag1259 Cone-Chr7:9355928 5.34E-68 dispersed
Cone12ag0585 Cone-Chr12:4589482 Cone5ag0021 Cone-Chr5:143141 4.53E-27 transposed
Cone3ag0751 Cone-Chr3:3905386 Cone5ag0021 Cone-Chr5:143141 6.52E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0021 . 27 358 Rapid Response to Elicitors AT3G05200 50.1 1.1e-70 264.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007000 1 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 36