Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0021 ATGATACTACCTATAATGAACTCCTCCATTTCCAAGATTCTAATCAATAGCAGCCGGCAGAACATTTATGCTGCACTGAGCAGCCATGTCGTCGTCACCTTTTCCCTTTTCGTTTTCTTTTTCCTCGCTCTTCTCTCGCCGGTCGGAGCTCAACCTACTCCTGACGCTAACCTCGATTCGTATCAGTACAAGTTTAGCCCCTCCATGGCGGTCATCGTTGTGATCCTGATCGCCGCACTTTTCTTCATGGCATTCTTCGCCTTCTACATCCGCCACTGCTCCGATTCACATTCCGTCGGAAACAGCATCCGAAATCTCGCCGGCAGATCCAGACGCGGGATGCGTGGCCTCGATCCGAGCGTGATCGAGACGTTCCCCACCTTGGTCTACTCCGCTGTCAAAGAGCACAAGGTCGGCAAAGGTGCGTTAGAATGTGCTGTCTGCTTAAACGAATTCGAGGACGATGAAACGCTGCGTTTACTGCCCAAGTGCGACCACGTTTTCCACCCTGAATGCATCGATGCTTGGTTGGGGTCCCACACTACGTGTCCAGTTTGCAGAGCCAACTTGTCGCCCGATCAGTCCGGCGAGTCTGGGAACCAACTCGCCGACTCTAACACCGAATTGGACCTCGAATCACAAAACGACACTGTACCGCCCACCGGAGAACCTCAGCAGCATCTACAAGAAGAGGAAGAGCAACCACAAGCAGTAGAAGCTCAGGTTCTGAATCGAAGCCGTACGCGCGGACGGTCTAGATCAAGCCGGATACGGCGGGTGTTCCCTCGGTCAAATTCCACCGGTCATTCATTGGTTCAACCGGGCGAGTGTACAGAACGGTTCACTTTAAGATTACCGGTTGAGATAAGGAAGCAGATAATGAACAGGAAGCTAAATCGGGCCACTAGCATGGTGGTGCTGCCTAGGGAAAGTAGTTCGAGAAGAGGGGGCGTAAACGGTGGAGATGGGGAGGGTAGTAGTAGAGGGAGATCCTACAGACGGCTTAAGAGCCTGGAGCCAAGAGTGAAGTCGGAGCGGTGGGTTCTGTCGAAAACAGCGCCGTTTCTCATGAGAATGTTGTCGATGAAGTCGCCCTCGCCGAAGGGGACGAGTAGTAATGCGGAGGAGAGAGATGGTGGACAGGGGGGTAAAGCGAGTGAACCAGGTCGACCTCCCGTTTAA 1182 53.13 MILPIMNSSISKILINSSRQNIYAALSSHVVVTFSLFVFFFLALLSPVGAQPTPDANLDSYQYKFSPSMAVIVVILIAALFFMAFFAFYIRHCSDSHSVGNSIRNLAGRSRRGMRGLDPSVIETFPTLVYSAVKEHKVGKGALECAVCLNEFEDDETLRLLPKCDHVFHPECIDAWLGSHTTCPVCRANLSPDQSGESGNQLADSNTELDLESQNDTVPPTGEPQQHLQEEEEQPQAVEAQVLNRSRTRGRSRSSRIRRVFPRSNSTGHSLVQPGECTERFTLRLPVEIRKQIMNRKLNRATSMVVLPRESSSRRGGVNGGDGEGSSRGRSYRRLKSLEPRVKSERWVLSKTAPFLMRMLSMKSPSPKGTSSNAEERDGGQGGKASEPGRPPV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 143141 144388 + Conep05aG0002100.1 Cone5ag0021 437039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0021 393 MobiDBLite consensus disorder prediction 191 224 - -
Cone5ag0021 393 SMART ring_2 145 186 IPR001841 -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 191 273 - -
Cone5ag0021 393 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Cone5ag0021 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 51 326 - -
Cone5ag0021 393 SUPERFAMILY RING/U-box 138 193 - -
Cone5ag0021 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 193 IPR013083 -
Cone5ag0021 393 Pfam Ring finger domain 144 187 IPR001841 -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 308 337 - -
Cone5ag0021 393 FunFam E3 ubiquitin-protein ligase ATL6 105 193 - -
Cone5ag0021 393 CDD RING-H2_EL5-like 144 187 - -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 356 393 - -
Cone5ag0021 393 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0748 Cone-Chr10:3779653 Cone5ag0021 Cone-Chr5:143141 4.26E-119 dispersed
Cone17ag1200 Cone-Chr17:8765006 Cone5ag0021 Cone-Chr5:143141 6.27E-65 dispersed
Cone4ag0442 Cone-Chr4:1981749 Cone5ag0021 Cone-Chr5:143141 1.83E-15 dispersed
Cone5ag0021 Cone-Chr5:143141 Cone7ag1259 Cone-Chr7:9355928 5.34E-68 dispersed
Cone12ag0585 Cone-Chr12:4589482 Cone5ag0021 Cone-Chr5:143141 4.53E-27 transposed
Cone3ag0751 Cone-Chr3:3905386 Cone5ag0021 Cone-Chr5:143141 6.52E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0021 K10664 - csv:101212548 364.77