Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0023 ATGGAAGAAGTAGCAGTAGCAGAAGCAGCGCCGCCGCCTGATCTAGCAGCTGATTGGAAGCACAGACACGACCATCAAAACCAGTCACATTATGATCAAATCCAACCCCACCACCATGTTCATGAAGCTCTCCATTCCACTTCCATTCTTACAATCACAATCATCTCTATCTCTATTTTCTTGCTCATCTGCGTACTCCTATTCGTATTGATTCTTCAACGGCTCAAATCTGCCAGAAGTAAGAATGCTGCGACCAATTCCAAAGACAGCAATAATCATATCCACAACATCATCAATGCCACCTTCAGTCCTCACTCCAGTACTATAAACTTCAATTCTAGCCCAGAAGTGAAGGGTGGGTGTTTGTATGGAGGCAGAGGAGCAGCTCAAATTAGATATAAAGGAGTTCAAGTGTTCACATACAAGCAGCTTGAGATCGCTACACAAACATTTTGTGAAGCAAATTTGATAGGAAATGGAGGGTTTGGAAAGGTCTACAAAGGGGTGCTTAGTGATGGGACCATGGCTGCCATTAAGATGTTGCATCCAAGCCAGGGCAAGCAAAGGGAGCGTGCTTTTCGGGTCGAGGTGGACTTGCTAAGTCGGTTACAATCTCCTTATTTGGTGGAGTTGCTTGGCTACTGTGCAGACCAAAACCATAGGCTTCTGATTTTTGAGTTCATGCCGCAAGGCACACTCCAACACCATCTGCATGAAAATGTTAAATCACCGGCGTTGGGTTGGGGCACCCGCTTGAGGATAGCCCTTGATTGTGCTAGGGCCCTTGAATTCCTCCACGAGTATGCAGTCCCTTCCGTTATCCACCGTAATTTCAAGTGCACCAACGTACTGCTGGATCACAACTTCCGGGCTACGGTTTCGGGTTTTGGGTGGGCAAAGATGGGTTCGGACAAGATCAACGGTCAGGTTTCGACCCGTGTGCTGGGGACCACTGGATATCTAGCACCAGAGTATGGTTCGACAGGGAAGCTAACATCAAAATCAGATGTATACAGCTATGGAGTGGTCCTTCTTGAGCTTTTGACAGGACGTGTACCCGTTGATATCAAGAGACCGCAAGGTGAACATGTTCTTGTCTCATGGGCTCTTCCAAGGTTAACTAGTAGAGAAAAACTGATGGAAATGGTTGATCCGGCAATAAAAGGGCAGTACTTAACGAAGGATCTGATTCATGTAGCAGCAATTGCAGCCATGTGTGTGCAGTCAGAAGCAGACTACAGGCCTCTAATGACTGATGTTGTGCAGTCACTAATACCTCTAGTTTCCATGGGTTCCTCTGCATCTTCTCGGTTCTTAAATCAAACATCTTCAAGACACCATGGGTAA 1347 46.4 MEEVAVAEAAPPPDLAADWKHRHDHQNQSHYDQIQPHHHVHEALHSTSILTITIISISIFLLICVLLFVLILQRLKSARSKNAATNSKDSNNHIHNIINATFSPHSSTINFNSSPEVKGGCLYGGRGAAQIRYKGVQVFTYKQLEIATQTFCEANLIGNGGFGKVYKGVLSDGTMAAIKMLHPSQGKQRERAFRVEVDLLSRLQSPYLVELLGYCADQNHRLLIFEFMPQGTLQHHLHENVKSPALGWGTRLRIALDCARALEFLHEYAVPSVIHRNFKCTNVLLDHNFRATVSGFGWAKMGSDKINGQVSTRVLGTTGYLAPEYGSTGKLTSKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTSREKLMEMVDPAIKGQYLTKDLIHVAAIAAMCVQSEADYRPLMTDVVQSLIPLVSMGSSASSRFLNQTSSRHHG 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 152332 157040 - Conep05aG0002300.1 Cone5ag0023 437041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0023 448 FunFam serine/threonine-protein kinase PBS1-like 126 227 - -
Cone5ag0023 448 Gene3D Phosphorylase Kinase; domain 1 126 227 - -
Cone5ag0023 448 CDD STKc_IRAK 157 427 - -
Cone5ag0023 448 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524(InterPro)
Cone5ag0023 448 PANTHER OS01G0750732 PROTEIN 31 436 IPR050885 -
Cone5ag0023 448 ProSiteProfiles Protein kinase domain profile. 151 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0023 448 Pfam Protein tyrosine and serine/threonine kinase 156 424 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0023 448 SUPERFAMILY Protein kinase-like (PK-like) 133 424 IPR011009 -
Cone5ag0023 448 FunFam Receptor-like serine/threonine-protein kinase ALE2 228 443 - -
Cone5ag0023 448 Gene3D Transferase(Phosphotransferase) domain 1 228 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1483 Cone-Chr12:10588937 Cone5ag0023 Cone-Chr5:152332 2.40E-129 dispersed
Cone5ag0023 Cone-Chr5:152332 Cone8ag1529 Cone-Chr8:11506065 2.03E-130 dispersed
Cone1ag1765 Cone-Chr1:58262007 Cone5ag0023 Cone-Chr5:152332 1.04E-230 wgd
Cone14ag0778 Cone-Chr14:4523716 Cone5ag0023 Cone-Chr5:152332 3.19E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82814 PF13639 zf-RING_2 2.70E-14 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0023 - - - 0.0