Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0040 ATGAAAATCGCAATGTCAGGGAAGAACATGGCGGCGGTGTTCTTGTTTCTCTTTCTAGCAGGGTTCTTATCTGGCATAGCAACAGCAGCTGATGATTCTTCACAGAAGTTGGGAACCGTGATCGGAATCGATCTCGGTACTACTTATTCATGTGTCGGTGTGTACAAGAACGGTAATGTCGAGATTATAGCGAACGATCAGGGAAACAGAATAACGCCCTCATGGGTCGCATTCACCGACTCCGAGCGTTTGATTGGAGAGGCGGCTAAAAATCAAGCTCCTCTCAATGCAGAGCGTACGATTTTCGACGTGAAGCGGCTTATTGGAAGAAGGTTTGATGATGCTGAGGTCCAGAGAGATATCAAGTTTTTACCATACAAGGTTGTCAATAAAGATGGGAAGCCTTATATTCAGGTTAAAGTTAAAGGTGAAACCAAGGCGTTTAGCCCTGAAGAAATCAGTGCTATGATCCTAGGGAAGATGAAAGAAACAGCTGAAGCATACTTGGGCAAGAAAATCAAAGATGTTGTCGTGACAGTTCCAGCTTATTTTAATGATGCACAAAGGCAAGCCACCAAGGACGCAGGTGTCATAGCGGGGCTAAATGTGGCCCGAATAATCAACGAGCCCACGGCAGCCGCTATAGCCTATGGATTAGACAAGAAGGGAGGAGAGAAAAATATATTGGTCTTTGATCTAGGTGGCGGTACATTTGATGTAAGCATCTTGACCATTGACAATGGTGTCTTTGAGGTCCTGTCTACAAGTGGAGACACCCATTTAGGAGGAGAAGACTTTGACCATAGAGTGATGGATTATTTCATCCAGTTGATCAAGAAGAAATATAACAAAGACGTCAGCAAGGATAACAAGGCTCTTGGCAAGCTTCGTCGTGAATGTGAAAGGGCTAAGAGAGCATTGAGTAGCCAACATCAAGTCCGAGTCGAGATTGAATCACTTTTCGATGGCGTAGATTTCTCTGAGCCCTTAACACGGGCCCGCTTTGAGGAGTTAAACATAGACTTGTTTAAGAAGACAATGGGGCCTGTTAAGAAGGCATTGGAAGATGCCGGGCTGAAGAAAACCAATATTGACGAGATTGTCTTGGTTGGAGGGAGTACTAGAATCCCTAAAGTTCAACAACTTTTGAAGGATTTCTTTGATGGGAAAGAGCCGAATAAAGGGGTTAATCCTGATGAGGCCGTTGCTTATGGTGCTGCCGTTCAAGGTGGAATTCTTAGTGGTGAAGGCGGCGAGGGGACTAAAGGTCTTCTTTTGTTGGATGTGACTCCTTTGAGTTTAGGTATTGAAACAGTCGGCGGTGTTATGACAAAACTGATCCCTAGGAATACTGTTATCCCTACTAAGAAATCTCAGATATTTTCCACGTACCAAGATCAACAAACCACCGTTTCTATCAAAGTATATGAAGGTGAAAGGAGCTTGACAAAGGATTGTCGCGAGCTCGGACAATTTGATCTCACTGGCATTCCACCCGCTCCAAGGGGTGTGCCTCAAATTGAAGTAACATTCGAGGTAGATGAAAATGGGATTCTACATGTGACAGCAAAGGATAAGGCTGGGAAGAGGTCACAATCAATCACCATTACTAACGATAAAGGACGGCTGAGTCAAGAAGAGATAGATCGGATGGTGAAGGAAGCGGAGGAATTCGCAGAAGAGGATAAGAAGGTGAAGGAGAAGATTGATGCAAGGAACAAGCTGGAAACATATATATACAACTTGAGGAGCAGCATTGATGATAAGGATAAATTAGCTGATAAAATTGATTCAGATGACAAGGAGAAGATTGATAGCGCGTTGAAGGAGGCGCTTGAATGGTTGGATGATAATCAGAATGCGGAGAAAGATGATTTTGATGACAAGTATAAAGAGGTTGAGGCTGTTTGTAATCCAATTATTAAGAAGGTTTATAAGAAAAGTGGTGGAAGTTCATCTGTTTCCGAAGAAGAAGGTGAAGAACCCAATGATGAGCTGTGA 2001 43.48 MKIAMSGKNMAAVFLFLFLAGFLSGIATAADDSSQKLGTVIGIDLGTTYSCVGVYKNGNVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAPLNAERTIFDVKRLIGRRFDDAEVQRDIKFLPYKVVNKDGKPYIQVKVKGETKAFSPEEISAMILGKMKETAEAYLGKKIKDVVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIQLIKKKYNKDVSKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNIDLFKKTMGPVKKALEDAGLKKTNIDEIVLVGGSTRIPKVQQLLKDFFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGEGTKGLLLLDVTPLSLGIETVGGVMTKLIPRNTVIPTKKSQIFSTYQDQQTTVSIKVYEGERSLTKDCRELGQFDLTGIPPAPRGVPQIEVTFEVDENGILHVTAKDKAGKRSQSITITNDKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNKLETYIYNLRSSIDDKDKLADKIDSDDKEKIDSALKEALEWLDDNQNAEKDDFDDKYKEVEAVCNPIIKKVYKKSGGSSSVSEEEGEEPNDEL 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 217216 220152 - Conep05aG0004000.1 Cone5ag0040 437058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 39 52 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 67 79 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 504 520 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 423 442 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 236 246 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 176 196 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 89 97 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 396 416 - -
Cone5ag0040 666 PRINTS 70kDa heat shock protein signature 364 380 - -
Cone5ag0040 666 Gene3D - 41 411 - -
Cone5ag0040 666 FunFam Heat shock protein 70 573 647 - -
Cone5ag0040 666 ProSitePatterns Heat shock hsp70 proteins family signature 3. 367 381 IPR018181 -
Cone5ag0040 666 FunFam Heat shock protein 70 41 231 - -
Cone5ag0040 666 Coils Coil 604 624 - -
Cone5ag0040 666 CDD HSPA5-like_NBD 38 411 IPR042050 -
Cone5ag0040 666 PANTHER HEAT SHOCK PROTEIN 70KDA 40 610 IPR013126 GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005788(PANTHER)|GO:0016020(PANTHER)|GO:0030433(PANTHER)|GO:0030968(PANTHER)|GO:0034663(PANTHER)|GO:0140662(InterPro)
Cone5ag0040 666 Coils Coil 548 568 - -
Cone5ag0040 666 Pfam Hsp70 protein 40 646 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cone5ag0040 666 ProSitePatterns Heat shock hsp70 proteins family signature 2. 230 243 IPR018181 -
Cone5ag0040 666 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 570 651 IPR029048 -
Cone5ag0040 666 Gene3D - 573 646 IPR029048 -
Cone5ag0040 666 SUPERFAMILY Actin-like ATPase domain 224 415 IPR043129 -
Cone5ag0040 666 MobiDBLite consensus disorder prediction 646 666 - -
Cone5ag0040 666 FunFam Heat shock 70 kDa 418 572 - -
Cone5ag0040 666 ProSitePatterns Heat shock hsp70 proteins family signature 1. 43 50 IPR018181 -
Cone5ag0040 666 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 418 572 IPR029047 -
Cone5ag0040 666 FunFam Heat shock 70 kDa 262 345 - -
Cone5ag0040 666 SUPERFAMILY Actin-like ATPase domain 38 221 IPR043129 -
Cone5ag0040 666 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 419 576 IPR029047 -
Cone5ag0040 666 Gene3D Actin; Chain A, domain 4 262 345 - -
Cone5ag0040 666 Gene3D - 222 396 - -
Cone5ag0040 666 FunFam Heat shock protein ssb1 102 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0594 Cone-Chr12:5240009 Cone5ag0040 Cone-Chr5:217216 0 dispersed
Cone5ag0040 Cone-Chr5:217216 Cone8ag0609 Cone-Chr8:5761574 0 dispersed
Cone1ag1748 Cone-Chr1:58193194 Cone5ag0040 Cone-Chr5:217216 6.29E-247 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0040 K09490 - mdm:103450916 1088.56