Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0041 | ATGGGGTATGTTAATGTACTTCATCCTTTTCACATGATTTTCATCATCATTTTCCTCCTCTTGTCATCGCAGACAATCAATGTTCATGGAGCGGTACAACATTTGGACTACATGGAGGAAAGTGAGTTCAGGAGTGAGAAACAGGTTGAGGAAGTCTCAGGGAAGGATGAGAGAGAAGAAACGGAAGCATTTCTAGTCGAGAAGTTTAGAGTTTTATTAAGATTAAGAAACTTCCACTCAAAAAATCAATCAACATTTTCTGCTGTTTATGTTTCTCCCTCACCTTCTCCTTTACCCGCTGGAGAACTCGAGTCTCCGGCCCCGGCCCCAGCGGTGCAACCCCGTTCACACCGTCACCCTCCTCAACATCACCGGCATAGAAAACCGCCATTTCACCGAGTTGAAAAGAAGGAAGAAGGAAATGGAAATGGGCTGAAAATAAGAACTATGATTGCTGCTCTTGTTTCGACAGGAGCTTCTGTTTTAGTATTCGGTTTTGGGTTTTGCTGGATCTGTAAGAAATTAAGAAAGCAGAAAAAGAGGAAACCCACAAGTACAAGAATAATTTATGAGAATGAGAAATCAAAGAGAACAGAGAGAAACGGGGTCTCAGAGTCTGCACTTGATCTGTTTTATGTTAATTCTCCAGGGAGGGATGATTTAGAGCTGCAGAATTCAGAAACTGTAATAACCCTCTCAGATCATCATCATGATAGTAACAGTAGTTCACCAAAACAAGAAGTCTTCAATCCTGAATTTGACAATGTAAGTAGTTCTTCAACAAAGGAAATCAAATCTGTTCATGTGAGTGATCAAGAAGAAGAAAAAGAAGAAGAGTCGATCAAATGTAATGAGAATTCTTCATCCGAGGAAAATAATGTTACTGTTAATGATGAATTCCATTCATCTGATGATGAATCTTTCCACTCTTTGTGTGATTCTCATTCATCGAATATTCGTCTTTCCAATGCTTCAGCAGCAAGCCTTAGCGATAATAGATCGGAAACTTTCTATGAAAATGTGTCGAAAGAATCTCAAGACAATGACTCGAAAAAAGCCCCACCTTTATCGTTATCATTACCACCGCCACCGCCACCACCACCACGACATCTTCCTCCTCCGGCCCCACCTATTAGATTTCCCGTTTCACATTCTTCACCGGGATCAATCACGTTACCAAACTTTGGCACGCCTTCTCCCCCTCAAAATCCTTCAAAACCACCTTGTATTCCTCCACCACCATGCCCACCTTCATTTGTGAAAGGAAACATCAATTATTCTCTCAAAACCCTACCTCCACCTCCCCAACCAATGCCTTTGGGAAAGGATGGAGCTCCACTTCCAAAGCTCAAGCCATTGCATTGGGATAAAGTACGGGCCGGGCCCGATCGTTCCACAGTCTGGGACAAGATTAGATCAAGCTCTTTCGAGCTGGACGAGGAAATGATCGAGTCGCTCTTTGGATACAATCTACAAAACTCGTTAAAGCACGATGAGGCTAAGAGCAAGACTCCTTCCCCTAGCAAGAATCTACTCGACCCAAAGAGAGTCCAGAACCTAACAATACTGTCCAAAGCCTTGAGCATAACTCCCGAGCAAGTATGCGAATCATTACAACAAGGGGACGGGTTGCGCTTAAGACAACTAGAAGCTCTGGTTAAGATGGCACCTACCCCAGAAGAAGAAGCCAAACTAACAATCTACAAAGGAGACCTTAATGAACTGGGGTCCGCCGAAAAATTTCTCAAAGCAGTTTTGAGGATTCCATATTCTTTTCAACGAGCCGAAGCCATGCTTTTCCGGGAAACTTTTGAAGACGACATAGTTGATCTTAAGAACTCTTTTTCAATGCTAGAGGAGGCATGCAAGGAATTAAGGTCAAGCAGGCTCTTTCTAAAACTACTTGAAGCCGTGCTCAAAACTGGAAACAGAATGAATGTAGGAACGATCAGAGGAGGCGCTAAGGCATTCAAACTAGACACCCTGTTGAAGCTATCTGATGTGAAAGGAACAGACGGTAAAACCACTTTACTCCATTTCGTGGTGCAAGAAATAGTCCGGTCTGAAGGAATAAAAGTTTCAAACAGCATAATGGGGAAGATAAGCCAGAAGAACAAGAACAAAACTGTCGAAGAAAGGGAAGAGGATTACAGAAGAATGGGGCTAGAGCTTGTCTTGGGTTTAAGTACCGAACTCCACAACGTGAAGAAAACCGCTTCGATCGACATGGACATTCTTGCTAGCTCCGTTTCGAATTTATCAGAGGGGATGAATAAACTGCATGGATTGATTACATGCGATGATATGAATGAGAGTTTTGTCAAGTGTATGAGAGTGTTTGTGAATGATGGAGAGAGAGTTTTGAATGAGTTGAAGAGAGAAGAGGATAAGGTATTGGAACGTGTGAAGGAGATTACGGAGTACTTTCATGGCAATTTGATCAAGGATGAGGCGAATCCGTTGAGGATTTTTGTGATTGTAAGAGATTTTCTGGGCATGTTGGATCATGTCTGCAAAGAGCTTAGAAATTTGAGAGTCCCACGTAGTCCTAATCCTCTTGCTCATTTCAGATGA | 2574 | 42.5 | MGYVNVLHPFHMIFIIIFLLLSSQTINVHGAVQHLDYMEESEFRSEKQVEEVSGKDEREETEAFLVEKFRVLLRLRNFHSKNQSTFSAVYVSPSPSPLPAGELESPAPAPAVQPRSHRHPPQHHRHRKPPFHRVEKKEEGNGNGLKIRTMIAALVSTGASVLVFGFGFCWICKKLRKQKKRKPTSTRIIYENEKSKRTERNGVSESALDLFYVNSPGRDDLELQNSETVITLSDHHHDSNSSSPKQEVFNPEFDNVSSSSTKEIKSVHVSDQEEEKEEESIKCNENSSSEENNVTVNDEFHSSDDESFHSLCDSHSSNIRLSNASAASLSDNRSETFYENVSKESQDNDSKKAPPLSLSLPPPPPPPPRHLPPPAPPIRFPVSHSSPGSITLPNFGTPSPPQNPSKPPCIPPPPCPPSFVKGNINYSLKTLPPPPQPMPLGKDGAPLPKLKPLHWDKVRAGPDRSTVWDKIRSSSFELDEEMIESLFGYNLQNSLKHDEAKSKTPSPSKNLLDPKRVQNLTILSKALSITPEQVCESLQQGDGLRLRQLEALVKMAPTPEEEAKLTIYKGDLNELGSAEKFLKAVLRIPYSFQRAEAMLFRETFEDDIVDLKNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGAKAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIVRSEGIKVSNSIMGKISQKNKNKTVEEREEDYRRMGLELVLGLSTELHNVKKTASIDMDILASSVSNLSEGMNKLHGLITCDDMNESFVKCMRVFVNDGERVLNELKREEDKVLERVKEITEYFHGNLIKDEANPLRIFVIVRDFLGMLDHVCKELRNLRVPRSPNPLAHFR | 857 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 220249 | 223189 | - | Conep05aG0004100.1 | Cone5ag0041 | 437059 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0041 | 857 | Coils | Coil | 781 | 808 | - | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 117 | 131 | - | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 97 | 142 | - | - | |
| Cone5ag0041 | 857 | PANTHER | FORMIN-RELATED | 21 | 843 | IPR027643 | GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro) | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 397 | 419 | - | - | |
| Cone5ag0041 | 857 | SMART | it6_source | 440 | 849 | IPR015425 | - | |
| Cone5ag0041 | 857 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 453 | 844 | - | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 233 | 293 | - | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 266 | 285 | - | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 243 | 265 | - | - | |
| Cone5ag0041 | 857 | Gene3D | Formin, FH2 domain | 464 | 849 | IPR042201 | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 356 | 381 | - | - | |
| Cone5ag0041 | 857 | Pfam | Formin Homology 2 Domain | 445 | 834 | IPR015425 | - | |
| Cone5ag0041 | 857 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 440 | 857 | IPR015425 | - | |
| Cone5ag0041 | 857 | MobiDBLite | consensus disorder prediction | 327 | 447 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone5ag0041 | Cone-Chr5:220249 | Cone9ag0106 | Cone-Chr9:462691 | 5.20E-121 | dispersed | |
| Cone5ag0041 | Cone-Chr5:220249 | Cone1ag1748 | Cone-Chr1:58193194 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0041 | K28090 | - | cit:102610047 | 777.319 |