Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0055 ATGCCCACTTCTATTTTTCTTCTTACCATAACACTCATATTTCTATCTTCATTTCAAGTTCTCTCCATTAATGTAACCTTCCCGACGTACCAAAACGTAACCAATCAAGTCCTGATCAGACGGGCTTGTGCCGACGTTTCGGATCAAAACGCATGCCTCGACACTGTACAATCCGAGATCAAAAAATCTGGTACCTTGTCACACCCGAATTTGATCTTAACCGCCGCAATTAGAGTCAGTCTTAAGGAAGCAAGAAAATCGATAGAATCGATAACAACCTTCAATACATTGTCGTTCAGCTACCGCGAACAAAACGCAATACAAGATTGCAAGGAGCTCTTAGATTTTTCCGTCTCGGAGTTAGCATGGTCTTTAGTCGAGATGAACAAGATCAGACGAGGCGAGAAAGACGGTCAAACGGAAGGCAATCTAAAGGCATGGTTAAGCGCTGCTTCGAGCAATCAAGACACTTGCCTTGAAGGGTTTGAAGGCACAGATAGGCATCTTGAAATGTTTATTAGAGGAAGCTTGAAACAAGTCACACAACTCATTACCAATGTTTTAGCCTTGTACACCCAACTACATACCTTACCTTTTAGACCAACTAGAGAAAACAACATCAGAAGTACGGATTCAGACAAATTCGATTCTCCTGAATTTCCAGGATGGATGGGTGAAACGGATCGTGATCTGCTTAAAGACAAACCCAAAAAGGCTCATGTGGATGCAATCGTGGCGGCAGATGGGTCAGGGAATTACATGACGATCACGGAAGCAATTAATGAAGCTCCAGATCATAGCATTAAGAGGTACGTTATATATATCAAGGAAGGTGTTTATAGGGAGAATATTGATATGAAAAGGAAGAAAACAAATATTATGTTTCTTGGAGATGGTATTGGAAAAACCATAGTCACTTCTAATAGGAATTTCTTGAAAGGATGGACCACTTTCAGAACTGCAACTGTTGCCGTTTCCGGGAAGGGATTCATAGCAAGAGACATGACGTTTCGTAACACGGCCGGACCACAGCGGCAGCAAGCTGTGGCGCTTAGAGTTGATTCAGACCAATCGGCGTTTTACAGGTGTAGCATGGAAGGATATCAAGACACTCTCTATATTCACTCTCTTCGCCAATTCTACCGTGAATGCAACATTTACGGCACAATAGATTACATTTTTGGCAATGGGGCAGCTGTGCTTCAAAACTGTCATATTTTCACTAGAGTGCCTCTACCTCTACAGAAGGTTACTATCACGGCCCAAGGCCGAAAAAGCCCACATCAGAGCACTGGGTTTTCGTTCCAAAACAGCTTTGTTTACGCGACCCAGCCCACTTATTTAGGAAGGCCGTGGAAGCAATACTCCAGAACTGTGTTTATGAATACTTACATGAGTGGTTTGGTCCAGCCCAGAGGATGGCTCGAGTGGGTTGGGAACTTTGCCTTGGGCACTCTGTGGTACGGTGAGTATAGGAATTATGGGCCTGGGGCATCTCTATCGGGCCGGGTGAGCTGGCCCGGTTACCATAAAATCGAGGATGCTGACACTGCAAGCTTCTTCACGGTGGGGAGGTTCATTGATGGGAGGTCATGGTTGCCTGGGACTGGAATCAAGTTCACGGATGGTTTGGGCATTTAG 1641 44.61 MPTSIFLLTITLIFLSSFQVLSINVTFPTYQNVTNQVLIRRACADVSDQNACLDTVQSEIKKSGTLSHPNLILTAAIRVSLKEARKSIESITTFNTLSFSYREQNAIQDCKELLDFSVSELAWSLVEMNKIRRGEKDGQTEGNLKAWLSAASSNQDTCLEGFEGTDRHLEMFIRGSLKQVTQLITNVLALYTQLHTLPFRPTRENNIRSTDSDKFDSPEFPGWMGETDRDLLKDKPKKAHVDAIVAADGSGNYMTITEAINEAPDHSIKRYVIYIKEGVYRENIDMKRKKTNIMFLGDGIGKTIVTSNRNFLKGWTTFRTATVAVSGKGFIARDMTFRNTAGPQRQQAVALRVDSDQSAFYRCSMEGYQDTLYIHSLRQFYRECNIYGTIDYIFGNGAAVLQNCHIFTRVPLPLQKVTITAQGRKSPHQSTGFSFQNSFVYATQPTYLGRPWKQYSRTVFMNTYMSGLVQPRGWLEWVGNFALGTLWYGEYRNYGPGASLSGRVSWPGYHKIEDADTASFFTVGRFIDGRSWLPGTGIKFTDGLGI 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 277864 279677 - Conep05aG0005500.1 Cone5ag0055 437073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0055 546 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Cone5ag0055 546 Pfam Plant invertase/pectin methylesterase inhibitor 38 190 IPR006501 GO:0004857(InterPro)
Cone5ag0055 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 195 IPR035513 -
Cone5ag0055 546 Pfam Pectinesterase 242 529 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone5ag0055 546 ProSitePatterns Pectinesterase signature 1. 267 286 IPR018040 -
Cone5ag0055 546 Gene3D - 237 544 IPR012334 -
Cone5ag0055 546 PANTHER PECTINESTERASE 14 534 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone5ag0055 546 FunFam Pectinesterase 236 544 - -
Cone5ag0055 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 194 IPR035513 -
Cone5ag0055 546 SMART PMEI_2 34 190 IPR006501 GO:0004857(InterPro)
Cone5ag0055 546 NCBIfam pectinesterase inhibitor domain 11 195 IPR006501 GO:0004857(InterPro)
Cone5ag0055 546 CDD PMEI-like_4 58 194 - -
Cone5ag0055 546 SUPERFAMILY Pectin lyase-like 241 542 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0895 Cone-Chr4:6721999 Cone5ag0055 Cone-Chr5:277864 2.68E-160 dispersed
Cone5ag0055 Cone-Chr5:277864 Cone5ag0685 Cone-Chr5:2933931 1.19E-139 dispersed
Cone5ag0054 Cone-Chr5:269828 Cone5ag0055 Cone-Chr5:277864 4.95E-89 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0055 K01051 - csv:101202977 803.897