Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0058 ATGGCGAATTTTGTCAAACCTGAGAATGCTCTGAAACGAGCTGAAGAGTTAATCAATATCGGACAGAAGCAAGATGCCCTGCAAGCGCTTCATGATCTTATTACCTCAAAGAAATACCGAGCATGGCAAAAGCCACTTGAAAAGATCATGTTTAAATATGTAGAGCTTTGCGTGGACATGAGGAGAGGAAGGTTTGCCAAGGATGGTTTGATTCAATATCGAATTGTCTGCCAGCAAGTCAATGTCTCTTCTCTGGAGGAGGTGATCAAGCATTTTATGCATCTCTCCACTGAGAAAGCTGAGCAGGCACGTAGTCAGGCACAGGCCCTGGAAGAGGCTCTAGATGTTGATGACTTGGAAGCAGATCAAAGGCCAGAAGATCTAATGCTTTCTTATGTTAGTGGAGAGAAGGGAAAGGATCGGTCCGATCGTGAACTTGTCACCCCTTGGTTCAAGTTTCTATGGGAGACATACAGAACAGTGCTTGAAATATTACGTAACAATTCAAAATTGGAGGCACTTTATGCGATGACTGCTCATCGGGCCTTCCAGTTCTGCAAGCAGTACAAAAGAACAACAGAATTTCGGAGGTTATGTGAAATTATCAGAAATCACCTTTCAAATCTTAATAAATATAGGGATCAAAGAGATAGGCCTGACCTATCAGCCCCAGAGAGTTTGCAACTATATCTTGACACAAGATGTGAACAACTAAAGATTGCTACAGAACTTGAACTCTGGCAGGAAGCTTTCCGCTCAGTTGAAGATATTCATGGATTGATGTGCTTGGTTAAAAAAACGCCCAAGGCATCCTTGATGGTGGTTTATTATGCCAAGTTAACTGAAATTTTCTGGATTTCAGCTAGCCATCTTTATCATGCATATGCATGGCTCAAGCTGTTCTCTCTACAGAAAAGCTTCAATAAGAATTTAAGCCAAAAGGATTTGCAATTAATAGCATCATCTGTTGTTTTAGCTGCTCTATCAGTGCCTCCCTATGACCATAAACACGGTGCATCACATTTGGAACTTGAAAACGAAAAAGAGCGCAACTCGAGAATGGAAAATCTTATAGGATTCAATCTTGACCCTAAACTTGACAATAGAGAAGTGTTTTCGCGATCAAACCTTCTCTCTGAACTGGTTTCAAAAGGAGTGCTTAGCTGTGCAACCCAGGAAGTAAAAGATATATACCATCTTATCGAGCATGAATTCTTGCCTCTTGATCTCACTTCAAAGCTGCAGCCTTCATTGAACAAAATCTCAAAGCTTGGGGGGAAGGTGGCATCAGCCTCATCTCTACCAGAAGTGCAACTTTCCCAGTATATTCCTGCCCTGGAAAAGCTTGGAACCCTGAGGTTGCTTCAGCAGGTGTCTCGGGTTTACCAGACAATGAAAATTGAGAGTTTATCCAAGATGCTCCCATTTTTTGATTTTCCCATTGTGGAAAAGATCTCTGTGGATGCTGTGAAGCAGAATTTCATAGCCATGAAAGTTGACCACATGAAGGGCGTTGTGTTATTTGGAAATTTAGGTGTTGAATCTGATGATTTACGGGATCACCTAACCGTTCTTGCTGCATCATTAAATAAAGCAAGGTCGATGATCTATCCTTCAGTACCGAAAGCATCAAAGATAGGTGGGCTGTTGCCTGGTTTAGCAGATACTGTGGATAAAGAACACAAGAGACTTCTTGCTCGAAAATCGATTATAGAGAAAAGGAAGGAGGAACAGGAGCGCCAACTCTTGGAAATGGAACGTGAGGAGGAATCAAGAAGACTACGATTACAGAAGATAACTGAAGAGGCAGAGCAAAAGAGACTTGCATCTGAGTATGAGCAAAGGAAAAATCAAAGGATTCTGAGAGAAATAGAAGAGCGGGAACTTGAAGAAGCACAAGCTTTGCTCCAGGCGCGTGGCACTAAAAAGAAGGGAAAGAAGCCAATCCTAGAAGGCGAAAAGATGACAAAGCAAACTTTGATGAAACTGGCACTTGATGAGCAGCTAAGAGAGAGGCAAGACATGGAGAAGAAATTACAAAAACTAGCTAAAACCATGGATTATCTAGAGAGAGCAAAAAGAGAAGAATCAGCACCCTTAATTGAAGCTGCATTTCAACAACGTATAGTTGAAGAGAGAGTACTACATGAACGGGAGCAACAGCTTGAGGTTGAGCTAAGCAAGCAGCGCCATGAAGGAGACCTCAAGGAGAAGATTCGCCTGTCCCGAATGATTGAGAATAAGATGATATTCCAGGAGAGAGTGATGAGCCGTCGTCAAGAAGAGTTTGACCGATGTAGAGCAGAGAGAAAGGAGCAGGTTAAGCAAATGATTCAGGCTAGGAGACTGGATAGGGAGATTAAGAGGAAGAAGGTATACTATGTGAGAACTGAAGAAGAAAAACTTAGAATCGTGCAAGAAGCGGAGGAAGCTCACAAGCGTGAAGAGGCTGAGAAACGTAGAAAGGAGGAGGCCGAACGCAAGGCTAAATTGGATGAGATTGCTGAAAAGCAGAGGCAGAGAGAACGGGAACTAGAAGAAAAAGAAAGGCTCAGAAAAGAAGCTTTGTTGGGGAGACCCGCTGAGGTGCCTTCTAGACTTTCTGAGACTATTCATCCTCGCTCTTCAGAGCCCATAGCTGCTACTCCTGCTGCTGCTTCTGCCGGTCCCACCTCTACCCCATCTGCTGGAAAATACGTGCCTAGGCACCTTCGTGAGAAGGCTGCCCAGCCACCACCACCTGTTGAATCTGACCGGTGGGGCAGTAGGCTGGATAGATGGCGATAG 2787 43.6 MANFVKPENALKRAEELINIGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVDMRRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADQRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLSNLNKYRDQRDRPDLSAPESLQLYLDTRCEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKASLMVVYYAKLTEIFWISASHLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALSVPPYDHKHGASHLELENEKERNSRMENLIGFNLDPKLDNREVFSRSNLLSELVSKGVLSCATQEVKDIYHLIEHEFLPLDLTSKLQPSLNKISKLGGKVASASSLPEVQLSQYIPALEKLGTLRLLQQVSRVYQTMKIESLSKMLPFFDFPIVEKISVDAVKQNFIAMKVDHMKGVVLFGNLGVESDDLRDHLTVLAASLNKARSMIYPSVPKASKIGGLLPGLADTVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLRLQKITEEAEQKRLASEYEQRKNQRILREIEERELEEAQALLQARGTKKKGKKPILEGEKMTKQTLMKLALDEQLRERQDMEKKLQKLAKTMDYLERAKREESAPLIEAAFQQRIVEERVLHEREQQLEVELSKQRHEGDLKEKIRLSRMIENKMIFQERVMSRRQEEFDRCRAERKEQVKQMIQARRLDREIKRKKVYYVRTEEEKLRIVQEAEEAHKREEAEKRRKEEAERKAKLDEIAEKQRQRERELEEKERLRKEALLGRPAEVPSRLSETIHPRSSEPIAATPAAASAGPTSTPSAGKYVPRHLREKAAQPPPPVESDRWGSRLDRWR 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 296555 301941 + Conep05aG0005800.1 Cone5ag0058 437076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0058 928 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 901 IPR027512 GO:0005852(InterPro)
Cone5ag0058 928 Coils Coil 93 120 - -
Cone5ag0058 928 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Cone5ag0058 928 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Cone5ag0058 928 MobiDBLite consensus disorder prediction 809 928 - -
Cone5ag0058 928 MobiDBLite consensus disorder prediction 809 859 - -
Cone5ag0058 928 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Cone5ag0058 928 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cone5ag0058 928 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Cone5ag0058 928 Coils Coil 615 635 - -
Cone5ag0058 928 Coils Coil 561 595 - -
Cone5ag0058 928 Coils Coil 795 854 - -
Cone5ag0058 928 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Cone5ag0058 928 Pfam PCI domain 437 508 IPR000717 -
Cone5ag0058 928 Gene3D - 364 494 - -
Cone5ag0058 928 Gene3D - 268 343 - -
Cone5ag0058 928 Gene3D UVR domain 217 267 - -
Cone5ag0058 928 Coils Coil 665 695 - -
Cone5ag0058 928 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 900 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1535 Cone-Chr1:57325335 Cone5ag0058 Cone-Chr5:296555 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0058 K03254 - vvi:100244162 1357.43