Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0061 ATGAGCCAGACAGAAGTATCAAGGATGAAGCCTCCTCTCGTTCCCCTTGCAACTTTACTTGGTCGTGAGCTTCAGAGTGAGAAGGTCGAAAAACCTTTTGTTAAGTTTGGTCAGGCTGCTTTGGCAAAGAAAGGAGAGGACTACTTTCTGATAAACCCTGATTACCAGCGGATTCCTGGAAACCTGTCAACATCTTTTTCTGTATTTGGGATTTTTGATGGGCATAATGGCATATCGGCTGCTATATTTGTAAAGGAGCGTCTATTGGACAATGTCTTGAATGCAATTCCCGAAGGTGCCAGCCGAGAAGAATGGTTTCAAGCCCTCCCTCGGGCTCTAGTTGCAGGTTTCGTGAAAACTGACATAGAGTTTCAGCAGAAAGGAGAGACCTCTGGGACTACTGTCACATTGGTTGTGATTGATGGGTGGACTGTTACTGTTGCATCTGTTGGGGATTCTCGGTGCATTTTAGACACTCAGGGAGGTGTAGTTTCTCTATTGACCGTTGATCACAGGTTGGAGGAGAACATTGAAGAAAGGGAGCGTGTAACTGCAAGTGGGGGTGAGGTAGGAAGGCTGAATGTTTTTGGGGGTAACGAGGTTGGGCCCCTCCGCTGCTGGCCTGGTGGTCTCTGTCTTTCTAGATCGATTGGCGACACGGATGTGGGAGAATTCATCGTCCCAATACCACACGTTAAACAAGTGAAGCTCTCAGATGCTGGTGGAAGACTAATTATAGCTTCTGATGGTATATGGGATGCATTATCTTCTGATATGGCTGCTCAGTCTTGTCGAGGTTTACCTGCTGAGCTTGCTGCCAAGCTAGTTGTGAAGGAGGCTCTGCGGTCAAGGGGCCTGAAGGATGATACAACCTGCCTGGTTGTTGATATTATTCCATCTGATCATCCTGTGTTGCCAGCAACTCCAAGGAAGAAACAAAATATGCTCACTTCATTTATCTTCGGGAAGAAATCTCTGAACACTTTGAATAAATCTGCAAATAAACTTTCAACTGTTGGAGTTGTGGAGGAATTATTTGAAGAAGGTTCTGCAATGCTTGCAGAAAGGCTGGGTAAGGATTTTCCTCTGGACAAAAGCTCTGGAGTTTTCAAGTGTGCTGTCTGCCAAGTGGATCAGCCATCAAACGAAGGTTTGTCTGTGAATTCCGGGCCTTTCTTCTCAACGGCATCAAAGCCATGGGAGGGTCCCTTCCTCTGTGCTAACTGTCGTAAAAAGAAAGATGCTATGGAAGGGAAAAGGCCAAGCAGACCCACAATAACCGCTTAA 1287 46.23 MSQTEVSRMKPPLVPLATLLGRELQSEKVEKPFVKFGQAALAKKGEDYFLINPDYQRIPGNLSTSFSVFGIFDGHNGISAAIFVKERLLDNVLNAIPEGASREEWFQALPRALVAGFVKTDIEFQQKGETSGTTVTLVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENIEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSDAGGRLIIASDGIWDALSSDMAAQSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHPVLPATPRKKQNMLTSFIFGKKSLNTLNKSANKLSTVGVVEELFEEGSAMLAERLGKDFPLDKSSGVFKCAVCQVDQPSNEGLSVNSGPFFSTASKPWEGPFLCANCRKKKDAMEGKRPSRPTITA 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 306019 309682 - Conep05aG0006100.1 Cone5ag0061 437079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0061 428 Gene3D - 38 301 IPR036457 -
Cone5ag0061 428 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Cone5ag0061 428 ProSiteProfiles PPM-type phosphatase domain profile. 25 297 IPR001932 -
Cone5ag0061 428 FunFam probable protein phosphatase 2C 5 35 302 - -
Cone5ag0061 428 SMART PP2C_SIG_2 33 297 IPR001932 -
Cone5ag0061 428 SMART PP2C_4 23 295 IPR001932 -
Cone5ag0061 428 PANTHER PROTEIN PHOSPHATASE 36 296 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone5ag0061 428 Pfam Protein phosphatase 2C 62 280 IPR001932 -
Cone5ag0061 428 CDD PP2Cc 43 297 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0184 Cone-Chr20:794121 Cone5ag0061 Cone-Chr5:306019 5.36E-163 dispersed
Cone4ag1564 Cone-Chr4:12007728 Cone5ag0061 Cone-Chr5:306019 9.03E-164 dispersed
Cone5ag0061 Cone-Chr5:306019 Cone7ag1386 Cone-Chr7:9975888 8.15E-44 dispersed
Cone1ag1537 Cone-Chr1:57335055 Cone5ag0061 Cone-Chr5:306019 6.70E-299 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0061 - - - 0.0