Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0070 | ATGGGTCACACTAGCAACAATGCTGTTGGAGTTGATAACACATTCAGAAGGAAATTCGATCGAGAGGAGTATTTAGAACGCGCTCGCGAGCGCGAAAAGCAGGTTCTCCAAGGGGCCCCACCAGTTCAAAGGAAACCCCTAAAACACAGGGATTATGAAGTAGACCTTGAATCTCACTTGGGTAAAACTCAGGTTGTTACTCCAGTCACGCCTCTAAGCCAGCAGGCTGGCTACTATTGTTCGGTTTGTGAGTGTGTAGTAAAGGATTCAGCAAACTACTTGGATCATATCAATGGAAAGAAACATCAAAGAGCCTTGGGTATGTCTATGCGAGTAGAACGTGCATCTCTTCAACAGGTGCAGGAGCGCTTTGAAAATCTCAAGAAGAGAAAAACTCCCGGTAGCTTTACCGAACAAGATCTCGAGGAGCGGATCATAAAACAGCAGCAAGAGGAGGAGGAACATAAGCGCCTGCATCGAGAAAGGAAGGAGAAAAAGGGGAAGCAGCAGTAG | 513 | 46.59 | MGHTSNNAVGVDNTFRRKFDREEYLERAREREKQVLQGAPPVQRKPLKHRDYEVDLESHLGKTQVVTPVTPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFENLKKRKTPGSFTEQDLEERIIKQQQEEEEHKRLHRERKEKKGKQQ | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 346906 | 348812 | + | Conep05aG0007000.1 | Cone5ag0070 | 437088 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0070 | 170 | Pfam | Zinc-finger of C2H2 type | 78 | 102 | IPR013087 | - | |
Cone5ag0070 | 170 | Coils | Coil | 110 | 130 | - | - | |
Cone5ag0070 | 170 | SMART | ZnF_U1_5 | 75 | 109 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
Cone5ag0070 | 170 | FunFam | zinc finger matrin-type protein 2-like | 72 | 110 | - | - | |
Cone5ag0070 | 170 | Gene3D | Classic Zinc Finger | 72 | 110 | - | - | |
Cone5ag0070 | 170 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 10 | 169 | IPR040107 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER) | |
Cone5ag0070 | 170 | SUPERFAMILY | beta-beta-alpha zinc fingers | 73 | 115 | IPR036236 | - | |
Cone5ag0070 | 170 | MobiDBLite | consensus disorder prediction | 129 | 170 | - | - | |
Cone5ag0070 | 170 | Coils | Coil | 138 | 168 | - | - | |
Cone5ag0070 | 170 | MobiDBLite | consensus disorder prediction | 129 | 160 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag1547 | Cone-Chr1:57372776 | Cone5ag0070 | Cone-Chr5:346906 | 8.95E-92 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46087 | PF14543 | TAXi_N | 4.80E-28 | CL0129 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0070 | K12848 | - | csv:101206387 | 253.832 |