Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0070 ATGGGTCACACTAGCAACAATGCTGTTGGAGTTGATAACACATTCAGAAGGAAATTCGATCGAGAGGAGTATTTAGAACGCGCTCGCGAGCGCGAAAAGCAGGTTCTCCAAGGGGCCCCACCAGTTCAAAGGAAACCCCTAAAACACAGGGATTATGAAGTAGACCTTGAATCTCACTTGGGTAAAACTCAGGTTGTTACTCCAGTCACGCCTCTAAGCCAGCAGGCTGGCTACTATTGTTCGGTTTGTGAGTGTGTAGTAAAGGATTCAGCAAACTACTTGGATCATATCAATGGAAAGAAACATCAAAGAGCCTTGGGTATGTCTATGCGAGTAGAACGTGCATCTCTTCAACAGGTGCAGGAGCGCTTTGAAAATCTCAAGAAGAGAAAAACTCCCGGTAGCTTTACCGAACAAGATCTCGAGGAGCGGATCATAAAACAGCAGCAAGAGGAGGAGGAACATAAGCGCCTGCATCGAGAAAGGAAGGAGAAAAAGGGGAAGCAGCAGTAG 513 46.59 MGHTSNNAVGVDNTFRRKFDREEYLERAREREKQVLQGAPPVQRKPLKHRDYEVDLESHLGKTQVVTPVTPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFENLKKRKTPGSFTEQDLEERIIKQQQEEEEHKRLHRERKEKKGKQQ 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 346906 348812 + Conep05aG0007000.1 Cone5ag0070 437088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0070 170 Pfam Zinc-finger of C2H2 type 78 102 IPR013087 -
Cone5ag0070 170 Coils Coil 110 130 - -
Cone5ag0070 170 SMART ZnF_U1_5 75 109 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone5ag0070 170 FunFam zinc finger matrin-type protein 2-like 72 110 - -
Cone5ag0070 170 Gene3D Classic Zinc Finger 72 110 - -
Cone5ag0070 170 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 10 169 IPR040107 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER)
Cone5ag0070 170 SUPERFAMILY beta-beta-alpha zinc fingers 73 115 IPR036236 -
Cone5ag0070 170 MobiDBLite consensus disorder prediction 129 170 - -
Cone5ag0070 170 Coils Coil 138 168 - -
Cone5ag0070 170 MobiDBLite consensus disorder prediction 129 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1547 Cone-Chr1:57372776 Cone5ag0070 Cone-Chr5:346906 8.95E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46087 PF14543 TAXi_N 4.80E-28 CL0129 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0070 K12848 - csv:101206387 253.832