Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0075 ATGTGCTGTCATGAACTCCTTTTGGTGCAGAAAGTGTTTGAGTTATACGAGAAAATCTCAAGCCTTGACAGCCTCAAGCCCTCGCAAGATGTCGACATGCTCTTCACACAGCTTGTTCTCACTTGCATCCCAATACAGCCTGTAGATGTTACCAATTTGTGCAATAGCGTTCAAGAAATGAGGTCAAAACTCATCAGGCTATGTGGAGAAGCTGAAGGACTGTTAGAAACCCATTTCTCCACCATCTTAGCCTCCTACGAAGACCCACTTGCTCATTTGAACGTTTTCCCCTACTATTCCAATTACCTCAAACTAAGCCTCCTTGAATTCAACATTCTTAAGCAGCACTGCACTCAAAACCCTAGCAAAATTGCCTTTGTGGGTTCTGGCCCTCTCCCTTTGACCTCAATCGTTTTGGCCTCTAAACACCTTACATCAACGCGTTTCCATAATTATGATATCGACCCGTTGGCCAATTCTAAGGCTTCTCAATTGATCTCATCCGATCCTGACCTGTCGGAAAGAATGGTGTTTCATACTAGAGATGTAATGGATGTTACAACTGAATTGAAAGACTATGAAGTGGTCTTCTTGGCAGCTTTAGTAGGGATTGATGAGGAAGAGAAGGTTAGAGTGATTGAGCATTTAGGGAAGTACATGGCTCCTGGATCGATTTTGATGCTAAGGAGTGCTCGTGGGGCAAGGGCTTTTCTTTATCCGGTGGTCGATGCTATGGATTTACGAGGTTTTGAGGTTCTTTCTGTGTTTCATCCAACGGATGAAGTTATTAATTCGGTCGTTATCGCACGCACTTGCTCGTCTTTTGATTTCGATTTACTCGTATGA 846 43.5 MCCHELLLVQKVFELYEKISSLDSLKPSQDVDMLFTQLVLTCIPIQPVDVTNLCNSVQEMRSKLIRLCGEAEGLLETHFSTILASYEDPLAHLNVFPYYSNYLKLSLLEFNILKQHCTQNPSKIAFVGSGPLPLTSIVLASKHLTSTRFHNYDIDPLANSKASQLISSDPDLSERMVFHTRDVMDVTTELKDYEVVFLAALVGIDEEEKVRVIEHLGKYMAPGSILMLRSARGARAFLYPVVDAMDLRGFEVLSVFHPTDEVINSVVIARTCSSFDFDLLV 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 361880 362725 + Conep05aG0007500.1 Cone5ag0075 437093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0075 281 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cone5ag0075 281 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 229 IPR029063 -
Cone5ag0075 281 PANTHER NICOTIANAMINE SYNTHASE 3 6 271 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cone5ag0075 281 Pfam Nicotianamine synthase protein 7 271 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cone5ag0075 281 Gene3D Vaccinia Virus protein VP39 2 273 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0075 K05953 - - vvi:100254544 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0075 Cone-Chr5:361880 Cone5ag0076 Cone-Chr5:365771 5.93E-138 tandem
Cone1ag1552 Cone-Chr1:57389062 Cone5ag0075 Cone-Chr5:361880 2.66E-80 wgd
Cone10ag0819 Cone-Chr10:4161491 Cone5ag0075 Cone-Chr5:361880 8.63E-132 wgd
Cone3ag0845 Cone-Chr3:4328238 Cone5ag0075 Cone-Chr5:361880 8.66E-133 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0076 . 1 319 Nicotianamine Synthase Gene Family AT1G09240 61.7 7.2e-108 387.9
Cone3ag0845 . 12 334 Nicotianamine Synthase Gene Family AT1G09240 59.5 2.1e-99 359.8
Cone5ag0075 . 1 270 Nicotianamine Synthase Gene Family AT1G09240 65.9 2.8e-99 359.4
Cone10ag0819 . 12 330 Nicotianamine Synthase Gene Family AT1G09240 58.9 1.3e-96 350.5
Cone1ag1552 . 1 229 Nicotianamine Synthase Gene Family AT1G09240 51.1 5.6e-60 228.8
Cone5ag0076 . 3 285 Nicotianamine Synthase Gene Family AT1G56430 62.5 2.6e-105 379.4
Cone5ag0075 . 3 270 Nicotianamine Synthase Gene Family AT1G56430 65.3 6.2e-99 358.2
Cone3ag0845 . 1 334 Nicotianamine Synthase Gene Family AT1G56430 55.3 4.4e-97 352.1
Cone10ag0819 . 1 330 Nicotianamine Synthase Gene Family AT1G56430 55.4 5.4e-95 345.1
Cone1ag1552 . 1 196 Nicotianamine Synthase Gene Family AT1G56430 54.6 4.6e-62 235.7
Cone5ag0076 . 1 317 Nicotianamine Synthase Gene Family AT5G04950 60.8 1.8e-106 383.3
Cone5ag0075 . 1 270 Nicotianamine Synthase Gene Family AT5G04950 62.4 6.8e-98 354.8
Cone10ag0819 . 12 327 Nicotianamine Synthase Gene Family AT5G04950 56.3 2.8e-96 349.4
Cone3ag0845 . 8 331 Nicotianamine Synthase Gene Family AT5G04950 54.4 9.2e-95 344.4
Cone1ag1552 . 1 227 Nicotianamine Synthase Gene Family AT5G04950 54.2 6.4e-64 241.9
Cone5ag0076 . 1 317 Nicotianamine Synthase Gene Family AT5G56080 57.0 1.3e-101 367.1
Cone3ag0845 . 8 331 Nicotianamine Synthase Gene Family AT5G56080 53.4 1.1e-95 347.4
Cone10ag0819 . 8 327 Nicotianamine Synthase Gene Family AT5G56080 54.2 1.1e-95 347.4
Cone5ag0075 . 1 270 Nicotianamine Synthase Gene Family AT5G56080 61.5 9.2e-95 344.4
Cone1ag1552 . 1 227 Nicotianamine Synthase Gene Family AT5G56080 51.2 4.1e-63 239.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125