Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0081 | ATGGCTTCTCGGGTTTCGAATGTGGAGGAATCGATGAATTTGGAAACGTCAGAGTCGATGCAGAGAAAGAAACGCCGCAAAATCACCACCGAAGAAGGTGAAACAACGTCGAATCACAGGTCTCACTTTAGAAATGCCGAAACAAGACGGTGGAGAACAGAGGCGGAGCAACAGATCTACTCCTCGAAGCTCTTCGAGGCTCTTCGTCGAGTCCGTCGGGATTCTTCGACGTCGTTGAAATCTCCGATTTCCGGAAGAAAAATCCGGGAGAGAGCCGATCGAATCCTAGCCGTCGCAGCCAAGGGAAGGACAAGATGGAGCAGAGCCATCCTGACGAGTCGTATAGGTCGGAAGCTCAAGAAGCACCAGAAGTCAAAACAAGTGAAGAAGCCCTCGATTAGGCCCGAGAAGATAATATTACCGGCGGTTGAGAGGAAACTCCGAATTCTCGGCCGATTGGTTCCTGGTAGCCGGAAGCTCTCGTTCCCGAACCTTCTAGAAGAAGCTACCGATTACATAGCGGCTCTAGAGATGCAGGTCCGAGCCATGACAGCCATCGCTGAGCTTCTCACCGGCACTCCGGCTGGAAATCGAACTCATGTAGCTAACTAG | 612 | 51.63 | MASRVSNVEESMNLETSESMQRKKRRKITTEEGETTSNHRSHFRNAETRRWRTEAEQQIYSSKLFEALRRVRRDSSTSLKSPISGRKIRERADRILAVAAKGRTRWSRAILTSRIGRKLKKHQKSKQVKKPSIRPEKIILPAVERKLRILGRLVPGSRKLSFPNLLEEATDYIAALEMQVRAMTAIAELLTGTPAGNRTHVAN | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 396828 | 397439 | + | Conep05aG0008100.1 | Cone5ag0081 | 437099 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0081 | 203 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 141 | 193 | IPR036638 | GO:0046983(InterPro) | |
| Cone5ag0081 | 203 | MobiDBLite | consensus disorder prediction | 16 | 50 | - | - | |
| Cone5ag0081 | 203 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 49 | 190 | IPR044660 | GO:0006355(InterPro) | |
| Cone5ag0081 | 203 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Cone5ag0081 | 203 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Cone5ag0081 | 203 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 127 | 176 | IPR011598 | GO:0046983(InterPro) | |
| Cone5ag0081 | 203 | CDD | bHLH_AtIBH1_like | 136 | 187 | IPR044549 | GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0100 | Cone-Chr4:482564 | Cone5ag0081 | Cone-Chr5:396828 | 7.92E-38 | dispersed | |
| Cone5ag0081 | Cone-Chr5:396828 | Cone7ag0095 | Cone-Chr7:417925 | 4.02E-40 | dispersed | |
| Cone1ag1557 | Cone-Chr1:57413133 | Cone5ag0081 | Cone-Chr5:396828 | 2.14E-104 | wgd | |
| Cone10ag0823 | Cone-Chr10:4186969 | Cone5ag0081 | Cone-Chr5:396828 | 4.10E-56 | wgd | |
| Cone15ag0723 | Cone-Chr15:4086223 | Cone5ag0081 | Cone-Chr5:396828 | 1.55E-41 | wgd | |
| Cone3ag0849 | Cone-Chr3:4369602 | Cone5ag0081 | Cone-Chr5:396828 | 5.07E-57 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0081 | - | - | - | 0.0 |