Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0081 ATGGCTTCTCGGGTTTCGAATGTGGAGGAATCGATGAATTTGGAAACGTCAGAGTCGATGCAGAGAAAGAAACGCCGCAAAATCACCACCGAAGAAGGTGAAACAACGTCGAATCACAGGTCTCACTTTAGAAATGCCGAAACAAGACGGTGGAGAACAGAGGCGGAGCAACAGATCTACTCCTCGAAGCTCTTCGAGGCTCTTCGTCGAGTCCGTCGGGATTCTTCGACGTCGTTGAAATCTCCGATTTCCGGAAGAAAAATCCGGGAGAGAGCCGATCGAATCCTAGCCGTCGCAGCCAAGGGAAGGACAAGATGGAGCAGAGCCATCCTGACGAGTCGTATAGGTCGGAAGCTCAAGAAGCACCAGAAGTCAAAACAAGTGAAGAAGCCCTCGATTAGGCCCGAGAAGATAATATTACCGGCGGTTGAGAGGAAACTCCGAATTCTCGGCCGATTGGTTCCTGGTAGCCGGAAGCTCTCGTTCCCGAACCTTCTAGAAGAAGCTACCGATTACATAGCGGCTCTAGAGATGCAGGTCCGAGCCATGACAGCCATCGCTGAGCTTCTCACCGGCACTCCGGCTGGAAATCGAACTCATGTAGCTAACTAG 612 51.63 MASRVSNVEESMNLETSESMQRKKRRKITTEEGETTSNHRSHFRNAETRRWRTEAEQQIYSSKLFEALRRVRRDSSTSLKSPISGRKIRERADRILAVAAKGRTRWSRAILTSRIGRKLKKHQKSKQVKKPSIRPEKIILPAVERKLRILGRLVPGSRKLSFPNLLEEATDYIAALEMQVRAMTAIAELLTGTPAGNRTHVAN 203
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 396828 397439 + Conep05aG0008100.1 Cone5ag0081 437099
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0081 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 193 IPR036638 GO:0046983(InterPro)
Cone5ag0081 203 MobiDBLite consensus disorder prediction 16 50 - -
Cone5ag0081 203 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 49 190 IPR044660 GO:0006355(InterPro)
Cone5ag0081 203 MobiDBLite consensus disorder prediction 1 15 - -
Cone5ag0081 203 MobiDBLite consensus disorder prediction 1 50 - -
Cone5ag0081 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983(InterPro)
Cone5ag0081 203 CDD bHLH_AtIBH1_like 136 187 IPR044549 GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0100 Cone-Chr4:482564 Cone5ag0081 Cone-Chr5:396828 7.92E-38 dispersed
Cone5ag0081 Cone-Chr5:396828 Cone7ag0095 Cone-Chr7:417925 4.02E-40 dispersed
Cone1ag1557 Cone-Chr1:57413133 Cone5ag0081 Cone-Chr5:396828 2.14E-104 wgd
Cone10ag0823 Cone-Chr10:4186969 Cone5ag0081 Cone-Chr5:396828 4.10E-56 wgd
Cone15ag0723 Cone-Chr15:4086223 Cone5ag0081 Cone-Chr5:396828 1.55E-41 wgd
Cone3ag0849 Cone-Chr3:4369602 Cone5ag0081 Cone-Chr5:396828 5.07E-57 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0081 - - - 0.0