Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0090 ATGGCGACTAGGCTTCAGTTTGAGAACTCATGTGAAGTTGGGGTCTTCTCCAAACTTACTAATGCTTACTGTTTGGTTGCAATTGGTGGCTCTGAAAGCTTTTACAGTGCATTTGAGGCAGAATTAGCAGATGCTCCGAACTTTCCGATCGTTAAAACTTCTATTGGAGGAACTCGCATAATTGGTCGCCTTTGTGCTGGAAACAGAAATGGGCTTCTGGTGCCTCACACCACTACTGATCAAGAACTTCAGCACTTGAGGAACAGTCTACCGGATAAAGTTGTTGTTCAACGTATAGATGAGAGACTCTCTGCTCTGGGGAATTGTATTGCATGCAATGACTACGTTGCTCTTGCGCACACTGATCTGGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTCGGTGTAGAAGTTTTCAGGCAGACAATTGCAGGCAATATCCTTGTTGGAAGCTACTGTGCCTTCTCCAACAGAGGTGGCTTGGTCCATCCTCATACATCCATTGATGATATGAATGAGCTTTCGACCCTTCTGCAAGTTCCCCTGGTGGCTGGAACTGTGAACCGTGGCAGTGAAGTAATAGCAGCCGGAATGACTGTGAATGACTGGACGGCATTTTGTGGGTCGGACACTACAGCAACTGAACTTTCAGTGATCGAGAATGTTTTCAAGTTGAGGGAAGCACAACCAAGTGCAATCGTGAATGAGATGAGAAAGTCATTGATTGATAGCTATGTGTGA 744 45.43 MATRLQFENSCEVGVFSKLTNAYCLVAIGGSESFYSAFEAELADAPNFPIVKTSIGGTRIIGRLCAGNRNGLLVPHTTTDQELQHLRNSLPDKVVVQRIDERLSALGNCIACNDYVALAHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIDDMNELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIENVFKLREAQPSAIVNEMRKSLIDSYV 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 426449 428891 - Conep05aG0009000.1 Cone5ag0090 437108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0090 247 PIRSF Transl_init_IF-6 1 228 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cone5ag0090 247 SMART eIF6neu2 3 206 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cone5ag0090 247 Hamap Translation initiation factor 6 [eif6]. 1 247 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cone5ag0090 247 SUPERFAMILY Pentein 1 226 - -
Cone5ag0090 247 NCBIfam translation initiation factor IF-6 4 226 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cone5ag0090 247 FunFam Eukaryotic translation initiation factor 6 1 227 - -
Cone5ag0090 247 Pfam eIF-6 family 4 205 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cone5ag0090 247 CDD IF6 2 225 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Cone5ag0090 247 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 246 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Cone5ag0090 247 Gene3D - 1 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1566 Cone-Chr1:57437971 Cone5ag0090 Cone-Chr5:426449 2.18E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0090 K03264 - gmx:100800352 452.595