Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0109 ATGGGCATAAAGGGTTTAACTAAGCTTTTAGCAGACAATGCTCCAAAGGGTATGAAGGAACATAAGTTCGAGAGCTTCTTTGGTCGCAAAATCGCCATCGATGCCAGCATGAGCATCTATCAGTTTCTTATTGTTGTTGGAAGAAGTGGAGCTGATGTCTTGACCAATGAGGCTGGTGAAGTTACCAGTCATTTGCAAGGCATGTTTTCTCGGACAATTAGACTTCTCGAAGCTGGAATAAAGCCGGTCTATGTTTTTGATGGGAAGCCCCCTGATTTGAAGAAACAAGAGCTTGCAAAACGATATTCAAAAAGGGCTGATGCTACTGAGGATTTGGCAGATGCTGTGGAGATTGGCAACAAGGAGGACATTGAGAAATTCAGCAAACGGACTGTGAAGGTGACGAAACAGCACAATGACGACTGTAAAAGACTATTAAAACTCATGGGAGTTCCCGTAATTGAGGCTCCTTCAGAAGCTGAGGCGCAATGTGCTGCACTTTGCAAATTAGGAAAGGTGTATGCTGTGGCTTCTGAGGATATGGATTCACTAACATTTGGAGCTCCTAAGTTTCTTCGCCATTTGATGGATCCTAGTTCAAGGAAAATTCCGGTCATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTGAATCTTTCAATGGATCAATTCATCGACTTGTGCATTCTTTCTGGATGTGATTATTGCGATAGCATTCGAGGAATTGGGGGACAGACTGCTCTTAAGCTTATCCGACAACATGGCTCTATAGAAAGTATAGTTGAGAACATGAACAAAGAGAGGTACCAAATACCAGAAGATTGGCCATACCAAGAAGCTCGCTTGCTGTTTAAAGAACCGGTTGTTGTTACTGATGAAGAGCAGCTCGATCTCAAGTGGACTGCACCGGATGAAGAAGGGCTGATTACCTTCTTAGTGAATGAAAATGGATTCAACGGTGACAGAGTGACAAAGGCGATAGAGAAAATTAAAGCTGCCAAAAACAAGTCGTCTCAAGGCCGTCTTGAGTCATTTTTCAAGCCAACGGCTAATCCATCTGTGCCAATAAAGAGGAAGAAAACGTTGGAAAACACTACCAAGGGAACTTCCAGTGCCACTAAGGGGGCCGCCAATAAAAAGTCAAAGTCTGGTGCTGGGAAAAGGAAATAG 1170 43.33 MGIKGLTKLLADNAPKGMKEHKFESFFGRKIAIDASMSIYQFLIVVGRSGADVLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAVEIGNKEDIEKFSKRTVKVTKQHNDDCKRLLKLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELNLSMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIESIVENMNKERYQIPEDWPYQEARLLFKEPVVVTDEEQLDLKWTAPDEEGLITFLVNENGFNGDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKKTLENTTKGTSSATKGAANKKSKSGAGKRK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 502017 505922 + Conep05aG0011000.1 Cone5ag0109 437127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0109 389 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 382 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Cone5ag0109 389 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Cone5ag0109 389 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Cone5ag0109 389 CDD PIN_FEN1 4 332 - -
Cone5ag0109 389 CDD H3TH_FEN1-Euk 222 290 - -
Cone5ag0109 389 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Cone5ag0109 389 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Cone5ag0109 389 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
Cone5ag0109 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Cone5ag0109 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Cone5ag0109 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Cone5ag0109 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Cone5ag0109 389 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Cone5ag0109 389 Gene3D - 10 222 - -
Cone5ag0109 389 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Cone5ag0109 389 FunFam Flap endonuclease 1 219 286 - -
Cone5ag0109 389 MobiDBLite consensus disorder prediction 338 389 - -
Cone5ag0109 389 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Cone5ag0109 389 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Cone5ag0109 389 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Cone5ag0109 389 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Cone5ag0109 389 Gene3D - 223 286 - -
Cone5ag0109 389 FunFam Flap endonuclease 1 10 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1587 Cone-Chr1:57523534 Cone5ag0109 Cone-Chr5:502017 2.54E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0109 K04799 - csv:101204273 663.299