Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0120 ATGGAAACTTCATCTACCAATTCCGATCCCTACATTAATTCTTCTTCTTCGTCGTCTTCAAACGCCACTAACTCGACCTCATTAGGAATCCGCTTCCCTTCCCTCAATTTCAATTTCTTCCACTCCCCATTATCCTTCTTGTTGGATCACTCTGGTATTCTTCGTGCTCACCAAGAAGCCACTGCCGATTCTTCTACTGTCAACCAGTTGCGACCTCGGTCTCTGAATCGGAATTATTCTTCCTCTCGTTCTGCTGCTGCTGCCGCCGTCTCTGAGTCCGGGGAGATCGCGATTAGGATTATTGGTGCGGGAGATCAAGACTCTGCTACTGCCTCCTCGCCGTCTGGGGCTCATCTGGTTGGAGAAGCTTGTTCCGATCAGGATGGTGGTGGAGTTGCTGTTTCCGACGATCAGACGGACTCTTCCAACGAGGAAAGAGTTCCCTTGGTGAATGATGACCCTTCTTTGACTGCTCGTTCTGGAGTCAGCCGTGACGGTGGGGACTCTTTTGGTGGGTCGGAAGATGACGGTGGTGTCAGAGACAGGGATTCAACTTACCAGAGATATGATATTCAACAGGTTGCTAGGTGGATTGAGCAGATTCTTCCCTTTTCTTTGTTATTGTTAGCTGTTTTCATCCGGCAGCATTTGCAAGGTTTTTTTGTCACACTATGGATTTCAGCTGTTATGTATAAATCAAATGATATTGTTAGGAAACAGACAGCTCTAAAGGGGGAGAGGAAGATCTCCGTCATTGCTGTCATTTCTGTTGCCTTTCTAATTCACGTTGTGGGAATTTACTGGTGGTTTCGTACTGATGATCTTCTTTATCCATTGGTCATGCTTCCACCAAAAGCCATACCACCTTTCTGGCATGCTGTATTCATCGTTTTGGTAAATGATACAATGGTGAGGCAGGCAGCAATGGCTTTCAAGTGTTTGCTACTTATGTATTACAAGAATGGGCGAGGCCACAATTTCCGTAGACAGGGTCAATTGTTAACTCTGATCGAGTACACTCTTCTCTTATACCGTGCTTTGTTACCAACACCTGTGTGGTACCGGTTCTTCTTGAACAAAAATTATGGAAGCCTCTTTTCATCACTGACTACAGGGTTATATCTAACTTTCAAGCTAACATCTGTTGTTGAGAAGATCCAATCCTTCTTTGCTGCATTAAAGGCCCTATCACAGAAAGAAGTCCACTATGGTTCTTCTGCAACATTAGAACAGGTAACTGCAGCAGGTGAACTCTGTGCCATTTGCCAGGAGAAGATGCATGCTCCTATCCTGTTGCGTTGTAAACACATCTTCTGTGAAGACTGTGTATCGGAGTGGTTCGAGAGGGAAAGAACATGCCCTCTATGCCGGGCTCTGGTTAAACCTGCAGATCTTCGAACATACGGAGATGGGTCGACAAACTTACTATTCCAACTTTTCTAA 1443 45.39 METSSTNSDPYINSSSSSSSNATNSTSLGIRFPSLNFNFFHSPLSFLLDHSGILRAHQEATADSSTVNQLRPRSLNRNYSSSRSAAAAAVSESGEIAIRIIGAGDQDSATASSPSGAHLVGEACSDQDGGGVAVSDDQTDSSNEERVPLVNDDPSLTARSGVSRDGGDSFGGSEDDGGVRDRDSTYQRYDIQQVARWIEQILPFSLLLLAVFIRQHLQGFFVTLWISAVMYKSNDIVRKQTALKGERKISVIAVISVAFLIHVVGIYWWFRTDDLLYPLVMLPPKAIPPFWHAVFIVLVNDTMVRQAAMAFKCLLLMYYKNGRGHNFRRQGQLLTLIEYTLLLYRALLPTPVWYRFFLNKNYGSLFSSLTTGLYLTFKLTSVVEKIQSFFAALKALSQKEVHYGSSATLEQVTAAGELCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRTYGDGSTNLLFQLF 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 543484 546499 - Conep05aG0012300.1 Cone5ag0120 437138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0120 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 478 IPR013083 -
Cone5ag0120 480 CDD RING-HC_RNFT1-like 417 457 - -
Cone5ag0120 480 ProSitePatterns Zinc finger RING-type signature. 434 443 IPR017907 -
Cone5ag0120 480 SMART ring_2 419 456 IPR001841 -
Cone5ag0120 480 MobiDBLite consensus disorder prediction 106 181 - -
Cone5ag0120 480 Pfam Ring finger domain 418 457 IPR001841 -
Cone5ag0120 480 MobiDBLite consensus disorder prediction 1 23 - -
Cone5ag0120 480 ProSiteProfiles Zinc finger RING-type profile. 419 457 IPR001841 -
Cone5ag0120 480 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 15 480 IPR044235 GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro)
Cone5ag0120 480 SUPERFAMILY RING/U-box 412 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1598 Cone-Chr1:57571891 Cone5ag0120 Cone-Chr5:543484 1.90E-301 wgd
Cone19ag1461 Cone-Chr19:9490476 Cone5ag0120 Cone-Chr5:543484 2.47E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0120 - - - 0.0