Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0136 ATGCAACATGATGCTGGTGAGGAGCAACCGCACGTTTTAGCCGTTGATGATAGCGTCATTGATCGCAAACTCGTTGAAAAGTTGCTCAAGAACTCCTCCTGCAAAGTGACTACTGCTGAAAATGGGAGGAGGGCTTTAGAATTTCTGGGTCTAGGAGATGATCAAACTAACACCTTGGATGATACGGTGTCGAAGGTGAGTATGATAATTACGGACTATTGCATGCCAGGAATGACTGGATATGAGCTTCTTAAGAAAATCAAGGAATCATCCAACATGAAGGAGGTTCCTGTAGTGATCATGTCATCCGAGAATGTCCCAACCCGTATCAACAAGTGCTTAGAGGAAGGGGCTCAGATGTTCATGATTAAACCTCTTAAACAGTCGGACGTAGCTAAAATGAAATGTCAGCTGATGAACTGCAGAAGCTAG 432 43.98 MQHDAGEEQPHVLAVDDSVIDRKLVEKLLKNSSCKVTTAENGRRALEFLGLGDDQTNTLDDTVSKVSMIITDYCMPGMTGYELLKKIKESSNMKEVPVVIMSSENVPTRINKCLEEGAQMFMIKPLKQSDVAKMKCQLMNCRS 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 592751 593596 - Conep05aG0013900.1 Cone5ag0136 437154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0136 143 Pfam Response regulator receiver domain 12 133 IPR001789 GO:0000160(InterPro)
Cone5ag0136 143 ProSiteProfiles Response regulatory domain profile. 11 139 IPR001789 GO:0000160(InterPro)
Cone5ag0136 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 135 IPR045279 GO:0009736(InterPro)
Cone5ag0136 143 FunFam Two-component response regulator ORR5 10 141 - -
Cone5ag0136 143 SUPERFAMILY CheY-like 9 135 IPR011006 -
Cone5ag0136 143 Gene3D - 5 141 - -
Cone5ag0136 143 SMART REC_2 10 135 IPR001789 GO:0000160(InterPro)
Cone5ag0136 143 CDD REC_typeA_ARR 12 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0068 Cone-Chr4:349029 Cone5ag0136 Cone-Chr5:592751 4.40E-52 dispersed
Cone5ag0136 Cone-Chr5:592751 Cone8ag0639 Cone-Chr8:6286505 3.49E-54 dispersed
Cone1ag1614 Cone-Chr1:57624446 Cone5ag0136 Cone-Chr5:592751 1.26E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46093 PF00249 Myb_DNA-binding 1.10E-14 CL0123 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0136 K14492 - rcu:8259560 229.95