Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0141 ATGGCCAGAAGAAAGAGCGAACGGAGAAGAGAAGAAGGTCGAAGCATGGAAATGAAAGATCCGTCGAACTCAAATCCGAGCTCTCAACAAAACCAGAGCTCTATCTCTAATGGACCACCGATCAGTTCGTCGTCAAACCCGAGCCATCCATTCCGAGGCGCGCATCACCGGCGGGCACATTCCGAGGTATATTTCCGGCTGCCTAACGATCTCGATCTGGTATCTGACCCGTTCGATGGCCCATCTGGTACCTTGGGATCTGAGGACGACCTTTTCTCCACTTTCATGGACATCGAGAAGTTTGGATCCAAACTCGACGACGGACCCTCTAAACCCGACATTGCTGGCGGTAATTTTCATCCGGACCGCCCTAGGCATCGCCATAGCAGTTCCGTTGATGGCTCTTCGCTTTTGGATGCTATAGAGGCTAAGAAGGCCATGGATCCTGATAAGCTCGCCGAGTTATGGACCATTGATCCCAAGAGAGCCAAAAGGATTTTGGCAAATAGACAGTCTGCTGCTCGTTCAAAAGAGAGGAAAGCCCGCTACATAACAGAGCTTGAGAGAAAAGTTCAAACCCTTCAAACTGAAGCCACCACACTTTCTGCTCAGCTAACTTTGTTCCAGAGAGATACAACAGGCTTGTGTACCGAAAACACCGAGCTCAAGCTTCGTTTACAAGCCATGGAACAACAAGCCCAGTTGCATGATGCTCTAAATGAAGCACTGAAAAAGGAAGTAGAGCAGCTCAAGATTGCTACAGGAGAAATACTGACACACACCGAAACTTTTAATTTCGGAATGCAGCATATGCCCTACACCCAGTCATGGTTTTCAAACCAGCCACAAGCCGGCCAACAGGATCCCCAGAACATTCAAAGGCCTGATCATCAAGTTCAAGCATTCCAGTCTAATTTTTCGGGCCCTCATCAGAGCCAACTTTCCGGGTCCCAGTCACACGACTTCTCTGAAATGTTACAGCAAGATCCTATCGGGCAGTTGCAGCTGCAGGGACTTGATATTGGTGGTAGAGGCTCCCATATAATAAAGCCTGAAGGTTCCTCTATTTCCATTAGTGAAAGCAGCAGTACGTTTTGA 1098 48.45 MARRKSERRREEGRSMEMKDPSNSNPSSQQNQSSISNGPPISSSSNPSHPFRGAHHRRAHSEVYFRLPNDLDLVSDPFDGPSGTLGSEDDLFSTFMDIEKFGSKLDDGPSKPDIAGGNFHPDRPRHRHSSSVDGSSLLDAIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLCTENTELKLRLQAMEQQAQLHDALNEALKKEVEQLKIATGEILTHTETFNFGMQHMPYTQSWFSNQPQAGQQDPQNIQRPDHQVQAFQSNFSGPHQSQLSGSQSHDFSEMLQQDPIGQLQLQGLDIGGRGSHIIKPEGSSISISESSSTF 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 607378 610061 + Conep05aG0014400.1 Cone5ag0141 437159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0141 365 MobiDBLite consensus disorder prediction 19 50 - -
Cone5ag0141 365 SUPERFAMILY Leucine zipper domain 161 212 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0141 365 Coils Coil 226 253 - -
Cone5ag0141 365 CDD bZIP_plant_RF2 162 211 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0141 365 Coils Coil 177 204 - -
Cone5ag0141 365 SMART brlzneu 157 221 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0141 365 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 159 222 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0141 365 Pfam bZIP transcription factor 161 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0141 365 MobiDBLite consensus disorder prediction 118 132 - -
Cone5ag0141 365 MobiDBLite consensus disorder prediction 345 365 - -
Cone5ag0141 365 FunFam probable transcription factor PosF21 160 213 - -
Cone5ag0141 365 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 37 313 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone5ag0141 365 MobiDBLite consensus disorder prediction 1 18 - -
Cone5ag0141 365 Gene3D - 160 212 - -
Cone5ag0141 365 MobiDBLite consensus disorder prediction 1 57 - -
Cone5ag0141 365 MobiDBLite consensus disorder prediction 103 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0660 Cone-Chr11:4403987 Cone5ag0141 Cone-Chr5:607378 1.21E-56 dispersed
Cone17ag0790 Cone-Chr17:6123935 Cone5ag0141 Cone-Chr5:607378 1.79E-09 dispersed
Cone18ag0852 Cone-Chr18:5842041 Cone5ag0141 Cone-Chr5:607378 2.45E-56 dispersed
Cone1ag0784 Cone-Chr1:53851457 Cone5ag0141 Cone-Chr5:607378 3.87E-33 dispersed
Cone20ag0385 Cone-Chr20:1803649 Cone5ag0141 Cone-Chr5:607378 1.96E-51 dispersed
Cone4ag1506 Cone-Chr4:11704846 Cone5ag0141 Cone-Chr5:607378 1.70E-10 dispersed
Cone5ag0141 Cone-Chr5:607378 Cone8ag1245 Cone-Chr8:10426305 8.78E-43 dispersed
Cone1ag1620 Cone-Chr1:57637603 Cone5ag0141 Cone-Chr5:607378 1.45E-152 wgd
Cone5ag0141 Cone-Chr5:607378 Cone5ag1039 Cone-Chr5:4543506 3.02E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46094 PF03062 MBOAT 4.80E-39 CL0517 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0141 - - - 0.0