Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0142 ATGGGGATTGCATCATTATCTTCTCTCACCCTTCTGCTCATTCTCGTCCACCTCTGCTGCATTCACACCACTCATGCTGGCTACGGTGAGTGGGAAGCCGCTCATGCCACATTCTACGGCGGTGGTGATGCATCCGGCACAATGGGGGGTGCTTGTGGGTATGGGAATTTGTATGGCCAAGGATATGGAACAAACACTGCAGCATTGAGCACTGCTCTATTCAATAATGGACTGAGTTGCGGTGCTTGTTATGAGATCACTTGTACAAGTGATCCGAGGTGGTGTGTTTCTGGGACCATTACAGTTACCGCCACCAATTTCTGCCCACCTAACTATGCCTTGTCTAATGACAATGGTGGTTGGTGCAATCCTCCTCTTCAACACTTCGACTTAGCCGAGCCGGCTTTCCTGCAAATCGCGCAGTACCGGGCTGGAATTGTCCCCGTCTCTTTCAGAAGGGTTCCATGCATGAAGAAAGGAGGGTTGAGATTTACAATCAACGGTCACTCTTACTTCAACCTGGTTTTAGTCACAAACGTGGGAGGTGCAGGGGATGTTCATTCGGTATCGATCAAAGGGTCCAAGACAGGGTGGCAGACTATGTCGAGGAATTGGGGGCAAAACTGGCAGAGCAATTCCTACCTTAACGGGCAGAGTCTCTCTTTCCAAGTGACCACTAGCGATGGTCGGACAATCACAAGCTACGACGTTGCTCCGGCGAATTGGCAATTCGGGCAGACATTTTCAGGCAGCCAATTCTAG 762 50.39 MGIASLSSLTLLLILVHLCCIHTTHAGYGEWEAAHATFYGGGDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLSCGACYEITCTSDPRWCVSGTITVTATNFCPPNYALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGLRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTITSYDVAPANWQFGQTFSGSQF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 611803 613086 + Conep05aG0014500.1 Cone5ag0142 437160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0142 253 Pfam Lytic transglycolase 66 151 IPR009009 -
Cone5ag0142 253 SUPERFAMILY Barwin-like endoglucanases 14 179 IPR036908 -
Cone5ag0142 253 SUPERFAMILY PHL pollen allergen 158 249 IPR036749 -
Cone5ag0142 253 FunFam Expansin 161 253 - -
Cone5ag0142 253 SMART dpbb_1 66 151 IPR007112 -
Cone5ag0142 253 CDD DPBB_EXPA_N 30 156 - -
Cone5ag0142 253 Gene3D - 161 253 IPR036749 -
Cone5ag0142 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576(InterPro)
Cone5ag0142 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576(InterPro)
Cone5ag0142 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576(InterPro)
Cone5ag0142 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576(InterPro)
Cone5ag0142 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576(InterPro)
Cone5ag0142 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576(InterPro)
Cone5ag0142 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Cone5ag0142 253 Gene3D - 18 157 IPR036908 -
Cone5ag0142 253 PANTHER EXPANSIN-A15 11 253 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 FunFam Expansin 21 157 - -
Cone5ag0142 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664(InterPro)
Cone5ag0142 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Cone5ag0142 253 Pfam Expansin C-terminal domain 163 239 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1202 Cone-Chr10:8884678 Cone5ag0142 Cone-Chr5:611803 1.46E-94 dispersed
Cone13ag0065 Cone-Chr13:406449 Cone5ag0142 Cone-Chr5:611803 1.69E-144 dispersed
Cone1ag0635 Cone-Chr1:6129085 Cone5ag0142 Cone-Chr5:611803 7.08E-132 dispersed
Cone1ag0781 Cone-Chr1:53837989 Cone5ag0142 Cone-Chr5:611803 2.63E-147 dispersed
Cone1ag1273 Cone-Chr1:56207894 Cone5ag0142 Cone-Chr5:611803 8.85E-130 dispersed
Cone20ag0059 Cone-Chr20:286845 Cone5ag0142 Cone-Chr5:611803 3.85E-115 dispersed
Cone2ag0518 Cone-Chr2:2874278 Cone5ag0142 Cone-Chr5:611803 1.28E-33 dispersed
Cone2ag0519 Cone-Chr2:2877933 Cone5ag0142 Cone-Chr5:611803 3.38E-101 dispersed
Cone4ag0531 Cone-Chr4:2389577 Cone5ag0142 Cone-Chr5:611803 8.65E-134 dispersed
Cone4ag1056 Cone-Chr4:9198068 Cone5ag0142 Cone-Chr5:611803 2.03E-131 dispersed
Cone4ag1994 Cone-Chr4:13949158 Cone5ag0142 Cone-Chr5:611803 2.70E-114 dispersed
Cone5ag0142 Cone-Chr5:611803 Cone6ag0576 Cone-Chr6:2820883 3.05E-142 dispersed
Cone11ag0763 Cone-Chr11:5439759 Cone5ag0142 Cone-Chr5:611803 1.03E-159 transposed
Cone1ag1621 Cone-Chr1:57641927 Cone5ag0142 Cone-Chr5:611803 8.79E-182 wgd
Cone18ag0813 Cone-Chr18:5002561 Cone5ag0142 Cone-Chr5:611803 2.93E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0142 - - - 0.0