Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0149 ATGGGCGCTGTTAGCAACACTCGTTTTTCTCAGGTGCTCATTGCTCCTCCTGAGAGTGGAAAATTCTTGAAGAACACGAACAAGACCAAAAACTACGTTCCGTTAAATTTCATGCTTTCCGCAAACTCCATGAAATTGAACAAAATCAGCTGCAAATTGCATGAAAGTGGGATTCATGAAAAGCCCACCAGTGTCGGAGCATCAAATCCCAAGAACAGAATGGAAGAGTACAATATAGCAATGAAGAAAATGATGAGGAACCCTTATGAGTATCACCATGAACTGGGCATGAACTACACACTGATAACGGATGATTTGATTGTCGGGTCCCAGCCTCAGAAACCTGAAGATATAGATCACCTAAAACAGGAAGAGAATGTGGCTTACATTCTTAATTTGCAGCAGGATAAGGATGTTGAGTATTGGGGAATTGATTTGCAATCTATAATCAAAAGATGTCAACAACTCGGAATTCGTCATATGAGGAGGCCTGCAAGAGATTTCGATCCAGATTCCTTGCGAAGTGGATTACCGAAGGCAGTTTCATCATTAGAGTGGGCAATTTCTGAGGGGAAGGGAAAAGTTTATGTTCATTGCACTGCTGGACTTGGAAGAGCCCCTGCCGTGGCAATTGCTTACATGTTCTGGTTTTGTGGAATGAATCTGAATACAGCATATAAGACTCTAACTTCAAAGAGACCATGTGGACCAAATAAAAGAGCGATTCGCGGAGCTACTTATGATCTAGCAAAGAATGATCCATGGAAGGAGCCCTTTGAGATCCTCTCCAATAATGCTTTCGGGGATGTTGCCGACTGGGAAAGAAAATCGATCCGGGACCGTGTTCATTCCCTTAGGGGAACTTAA 867 42.79 MGAVSNTRFSQVLIAPPESGKFLKNTNKTKNYVPLNFMLSANSMKLNKISCKLHESGIHEKPTSVGASNPKNRMEEYNIAMKKMMRNPYEYHHELGMNYTLITDDLIVGSQPQKPEDIDHLKQEENVAYILNLQQDKDVEYWGIDLQSIIKRCQQLGIRHMRRPARDFDPDSLRSGLPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMNLNTAYKTLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFEILSNNAFGDVADWERKSIRDRVHSLRGT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 631863 633721 - Conep05aG0015200.1 Cone5ag0149 437167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0149 288 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 240 IPR029021 -
Cone5ag0149 288 Pfam Dual specificity phosphatase, catalytic domain 119 235 IPR000340 GO:0016311(InterPro)
Cone5ag0149 288 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 81 288 - -
Cone5ag0149 288 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 234 IPR000387 GO:0016311(InterPro)
Cone5ag0149 288 SMART dsp_5 98 248 IPR020422 GO:0006470(InterPro)
Cone5ag0149 288 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 41 256 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Cone5ag0149 288 ProSiteProfiles Dual specificity protein phosphatase domain profile. 98 255 IPR020422 GO:0006470(InterPro)
Cone5ag0149 288 CDD DSP_laforin-like 97 244 IPR045204 GO:0019203(InterPro)
Cone5ag0149 288 Gene3D Protein tyrosine phosphatase superfamily 81 288 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1393 Cone-Chr1:56720858 Cone5ag0149 Cone-Chr5:631863 3.47E-41 dispersed
Cone5ag0149 Cone-Chr5:631863 Cone5ag0384 Cone-Chr5:1640964 4.43E-44 dispersed
Cone1ag1626 Cone-Chr1:57658709 Cone5ag0149 Cone-Chr5:631863 9.63E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0149 - - - 0.0