Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0152 | ATGTGCGAAGAAAGGGAGAGATATGATGAGATAGTGAAAAGGATAAAGAGAGAGACAGCAGATGCCTCAAATTCTTCTCAAATGAGAAGAAGACACATGTTAGGCCCACTTGGTTCCTTAAACACAATAACGCCATGCGCTGCCTGTAAGCTCTTAAGAAGACGATGCGCTCAAGAATGTCCCTTCTCTCCCTACTTCTCTCCTCACGAACCCCACAGATTCGCTTCCGTCCACAAGGTCTTCGGCGCAAGCAACGTCTCCAAAATGCTCCTGGAGGTACCGCAAAGTCAAAGGGCCGATGCGGCTAACAGTCTCGTAATCGAGGCGAACGTGAGGCTAAGGGACCCGGTTTATGGATGCATGGGTGCAATTTCAGCTTTGCAGCAACAAGTTCAAGCCTTACAAGCTGAGCTTAATGCAGTAAGGAGTGAGATATTCAAGTACAAGTATAGAGAAGCTAATTTAATTAACATACCACCTTCTACTACTAGCTGTACTACTATTTCCACTACTACAGCTAGTACTCATTCTCATCATCACATGGCTAATTTGCTCGCCTCTAATAATTCCGCCTCCGCCGTTTCCGTTGCTGCTCTGCCACCTCACACCGTCGTTCAGCTCCCCCTTCCGCCACAGCCGCCGCCACCACCAGAAAATCCACCTCCGCCTCCTACTTCATCTCCTTCTAATTCTATCTACAGCGCTTCTACTCAACCCTCTAGTGACGCTGCTGCTAGTGCTGCTACAGATCATCATTACAGTTCCATTTCTAATGACCACGATCATCACCATCATCACCAACATGTTTCCTACTTTGGTTAA | 822 | 47.32 | MCEERERYDEIVKRIKRETADASNSSQMRRRHMLGPLGSLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHRFASVHKVFGASNVSKMLLEVPQSQRADAANSLVIEANVRLRDPVYGCMGAISALQQQVQALQAELNAVRSEIFKYKYREANLINIPPSTTSCTTISTTTASTHSHHHMANLLASNNSASAVSVAALPPHTVVQLPLPPQPPPPPENPPPPPTSSPSNSIYSASTQPSSDAAASAATDHHYSSISNDHDHHHHHQHVSYFG | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 647674 | 648659 | + | Conep05aG0015500.1 | Cone5ag0152 | 437170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0152 | 273 | MobiDBLite | consensus disorder prediction | 229 | 253 | - | - | |
| Cone5ag0152 | 273 | MobiDBLite | consensus disorder prediction | 204 | 273 | - | - | |
| Cone5ag0152 | 273 | MobiDBLite | consensus disorder prediction | 254 | 273 | - | - | |
| Cone5ag0152 | 273 | Pfam | Lateral organ boundaries (LOB) domain | 45 | 142 | IPR004883 | - | |
| Cone5ag0152 | 273 | ProSiteProfiles | LOB domain profile. | 44 | 145 | IPR004883 | - | |
| Cone5ag0152 | 273 | MobiDBLite | consensus disorder prediction | 204 | 228 | - | - | |
| Cone5ag0152 | 273 | Coils | Coil | 124 | 144 | - | - | |
| Cone5ag0152 | 273 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 43 | 202 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone5ag0152 | Cone-Chr5:647674 | Cone8ag1587 | Cone-Chr8:11808670 | 4.14E-48 | dispersed | |
| Cone1ag1630 | Cone-Chr1:57674187 | Cone5ag0152 | Cone-Chr5:647674 | 6.43E-84 | wgd | |
| Cone11ag1202 | Cone-Chr11:9095715 | Cone5ag0152 | Cone-Chr5:647674 | 2.96E-37 | wgd | |
| Cone18ag0386 | Cone-Chr18:1870220 | Cone5ag0152 | Cone-Chr5:647674 | 4.51E-37 | wgd | |
| Cone4ag0083 | Cone-Chr4:403852 | Cone5ag0152 | Cone-Chr5:647674 | 2.30E-11 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46095 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0152 | - | - | - | 0.0 |