Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0152 ATGTGCGAAGAAAGGGAGAGATATGATGAGATAGTGAAAAGGATAAAGAGAGAGACAGCAGATGCCTCAAATTCTTCTCAAATGAGAAGAAGACACATGTTAGGCCCACTTGGTTCCTTAAACACAATAACGCCATGCGCTGCCTGTAAGCTCTTAAGAAGACGATGCGCTCAAGAATGTCCCTTCTCTCCCTACTTCTCTCCTCACGAACCCCACAGATTCGCTTCCGTCCACAAGGTCTTCGGCGCAAGCAACGTCTCCAAAATGCTCCTGGAGGTACCGCAAAGTCAAAGGGCCGATGCGGCTAACAGTCTCGTAATCGAGGCGAACGTGAGGCTAAGGGACCCGGTTTATGGATGCATGGGTGCAATTTCAGCTTTGCAGCAACAAGTTCAAGCCTTACAAGCTGAGCTTAATGCAGTAAGGAGTGAGATATTCAAGTACAAGTATAGAGAAGCTAATTTAATTAACATACCACCTTCTACTACTAGCTGTACTACTATTTCCACTACTACAGCTAGTACTCATTCTCATCATCACATGGCTAATTTGCTCGCCTCTAATAATTCCGCCTCCGCCGTTTCCGTTGCTGCTCTGCCACCTCACACCGTCGTTCAGCTCCCCCTTCCGCCACAGCCGCCGCCACCACCAGAAAATCCACCTCCGCCTCCTACTTCATCTCCTTCTAATTCTATCTACAGCGCTTCTACTCAACCCTCTAGTGACGCTGCTGCTAGTGCTGCTACAGATCATCATTACAGTTCCATTTCTAATGACCACGATCATCACCATCATCACCAACATGTTTCCTACTTTGGTTAA 822 47.32 MCEERERYDEIVKRIKRETADASNSSQMRRRHMLGPLGSLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHRFASVHKVFGASNVSKMLLEVPQSQRADAANSLVIEANVRLRDPVYGCMGAISALQQQVQALQAELNAVRSEIFKYKYREANLINIPPSTTSCTTISTTTASTHSHHHMANLLASNNSASAVSVAALPPHTVVQLPLPPQPPPPPENPPPPPTSSPSNSIYSASTQPSSDAAASAATDHHYSSISNDHDHHHHHQHVSYFG 273
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 647674 648659 + Conep05aG0015500.1 Cone5ag0152 437170
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0152 273 MobiDBLite consensus disorder prediction 229 253 - -
Cone5ag0152 273 MobiDBLite consensus disorder prediction 204 273 - -
Cone5ag0152 273 MobiDBLite consensus disorder prediction 254 273 - -
Cone5ag0152 273 Pfam Lateral organ boundaries (LOB) domain 45 142 IPR004883 -
Cone5ag0152 273 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Cone5ag0152 273 MobiDBLite consensus disorder prediction 204 228 - -
Cone5ag0152 273 Coils Coil 124 144 - -
Cone5ag0152 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 43 202 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0152 Cone-Chr5:647674 Cone8ag1587 Cone-Chr8:11808670 4.14E-48 dispersed
Cone1ag1630 Cone-Chr1:57674187 Cone5ag0152 Cone-Chr5:647674 6.43E-84 wgd
Cone11ag1202 Cone-Chr11:9095715 Cone5ag0152 Cone-Chr5:647674 2.96E-37 wgd
Cone18ag0386 Cone-Chr18:1870220 Cone5ag0152 Cone-Chr5:647674 4.51E-37 wgd
Cone4ag0083 Cone-Chr4:403852 Cone5ag0152 Cone-Chr5:647674 2.30E-11 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46095 None None None None Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0152 - - - 0.0