Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0169 | ATGTCAACGGGAACGATTGAAAGGAAAAGGAAATCGAGGAGTAGAGGTTCTGATTATATTTCTGAAACCCTAGCAAAGTGGAAAGTATACAATAAGAGTCTTGATTCGTCGTCCACTGATGAGCGAGACTCAGTCCGTAGAGCTATGGCAAAGGGGTCAAAAAAGGGATGTATGAAAGGCAAAGGTGGCCCAGAAAATTCGATATGTAAATACAGAGGAGTGCGGCAGAGGACTTGGGGAAAGTGGGTATCGGAAATCCGAGAACCCAACAGGGGGAAAAGGCTGTGGTTAGGTACTTTCCCGAATGCATTTGAAGCCGCACTTGCTTACGATAAAGCTGCTTCGGTCATGTATGGAAGCCGGGCCCGTCTTAACTTCCCAAACATGCCAAACTCTGAAGGTTCAGTCTCCTCTTCTTGGGCTGACACGACGGGGTCTGAATCTTCTGCTACCACATCGAACCAGTCTGAGGTGTGTGATATTAGACCGATTGGAATGGTGAAGTTGGAAGCGAGGGAAGAAGAAGAAGTAGGAAACAATCACGGGGTCGAACTGGATTCGAGGAGTAAAGAGGAGAACGTTACTGACTATATTACGGCCGAGGATTTTCGGAATTCTGGAATGGAAGAAGTGTTTGATGTGGAGGAGCTTCTGAATCTGATAGATGATATACCAGCGTGGGACACTGATTTGATGGGGGAATTTAGTGGAGGCAATGATAATGGTGAAGGATTCTTCTCGGAGGAGTTTTCGGAACTGATATATAAATTGCAGAATCCGGATGTGGAGTTGCTGGAAAGTCTGAATCAGATGGAGCAAAAAGCTTCAGATGGGGATTGCGGTTTTGATTTCTTGAAGAATTATGGCGATGGTTCTAATGATCGGGGAAATTTTGATTTCGATATGGGTTGA | 912 | 45.29 | MSTGTIERKRKSRSRGSDYISETLAKWKVYNKSLDSSSTDERDSVRRAMAKGSKKGCMKGKGGPENSICKYRGVRQRTWGKWVSEIREPNRGKRLWLGTFPNAFEAALAYDKAASVMYGSRARLNFPNMPNSEGSVSSSWADTTGSESSATTSNQSEVCDIRPIGMVKLEAREEEEVGNNHGVELDSRSKEENVTDYITAEDFRNSGMEEVFDVEELLNLIDDIPAWDTDLMGEFSGGNDNGEGFFSEEFSELIYKLQNPDVELLESLNQMEQKASDGDCGFDFLKNYGDGSNDRGNFDFDMG | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 705051 | 706530 | + | Conep05aG0017200.1 | Cone5ag0169 | 437187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0169 | 303 | CDD | AP2 | 69 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0169 | 303 | MobiDBLite | consensus disorder prediction | 35 | 50 | - | - | |
Cone5ag0169 | 303 | MobiDBLite | consensus disorder prediction | 127 | 155 | - | - | |
Cone5ag0169 | 303 | SUPERFAMILY | DNA-binding domain | 70 | 127 | IPR016177 | GO:0003677(InterPro) | |
Cone5ag0169 | 303 | PRINTS | Ethylene responsive element binding protein signature | 93 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0169 | 303 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0169 | 303 | FunFam | Ethylene-responsive transcription factor 2 | 69 | 128 | - | - | |
Cone5ag0169 | 303 | Gene3D | AP2/ERF domain | 69 | 128 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0169 | 303 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0169 | 303 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 6 | 225 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cone5ag0169 | 303 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone5ag0169 | 303 | MobiDBLite | consensus disorder prediction | 35 | 62 | - | - | |
Cone5ag0169 | 303 | Pfam | AP2 domain | 69 | 119 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag1367 | Cone-Chr3:32672418 | Cone5ag0169 | Cone-Chr5:705051 | 6.60E-47 | dispersed | |
Cone4ag1944 | Cone-Chr4:13710209 | Cone5ag0169 | Cone-Chr5:705051 | 1.78E-31 | dispersed | |
Cone5ag0169 | Cone-Chr5:705051 | Cone7ag1858 | Cone-Chr7:12016591 | 6.97E-34 | dispersed | |
Cone11ag0753 | Cone-Chr11:5298849 | Cone5ag0169 | Cone-Chr5:705051 | 8.58E-70 | transposed | |
Cone1ag1642 | Cone-Chr1:57719097 | Cone5ag0169 | Cone-Chr5:705051 | 8.04E-166 | wgd | |
Cone10ag0417 | Cone-Chr10:1953131 | Cone5ag0169 | Cone-Chr5:705051 | 7.69E-31 | wgd | |
Cone11ag1201 | Cone-Chr11:9087140 | Cone5ag0169 | Cone-Chr5:705051 | 1.40E-21 | wgd | |
Cone18ag0387 | Cone-Chr18:1880205 | Cone5ag0169 | Cone-Chr5:705051 | 3.88E-23 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46096 | PF01176 | eIF-1a | 1.00E-09 | CL0021 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0169 | - | - | - | 0.0 |