Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0169 ATGTCAACGGGAACGATTGAAAGGAAAAGGAAATCGAGGAGTAGAGGTTCTGATTATATTTCTGAAACCCTAGCAAAGTGGAAAGTATACAATAAGAGTCTTGATTCGTCGTCCACTGATGAGCGAGACTCAGTCCGTAGAGCTATGGCAAAGGGGTCAAAAAAGGGATGTATGAAAGGCAAAGGTGGCCCAGAAAATTCGATATGTAAATACAGAGGAGTGCGGCAGAGGACTTGGGGAAAGTGGGTATCGGAAATCCGAGAACCCAACAGGGGGAAAAGGCTGTGGTTAGGTACTTTCCCGAATGCATTTGAAGCCGCACTTGCTTACGATAAAGCTGCTTCGGTCATGTATGGAAGCCGGGCCCGTCTTAACTTCCCAAACATGCCAAACTCTGAAGGTTCAGTCTCCTCTTCTTGGGCTGACACGACGGGGTCTGAATCTTCTGCTACCACATCGAACCAGTCTGAGGTGTGTGATATTAGACCGATTGGAATGGTGAAGTTGGAAGCGAGGGAAGAAGAAGAAGTAGGAAACAATCACGGGGTCGAACTGGATTCGAGGAGTAAAGAGGAGAACGTTACTGACTATATTACGGCCGAGGATTTTCGGAATTCTGGAATGGAAGAAGTGTTTGATGTGGAGGAGCTTCTGAATCTGATAGATGATATACCAGCGTGGGACACTGATTTGATGGGGGAATTTAGTGGAGGCAATGATAATGGTGAAGGATTCTTCTCGGAGGAGTTTTCGGAACTGATATATAAATTGCAGAATCCGGATGTGGAGTTGCTGGAAAGTCTGAATCAGATGGAGCAAAAAGCTTCAGATGGGGATTGCGGTTTTGATTTCTTGAAGAATTATGGCGATGGTTCTAATGATCGGGGAAATTTTGATTTCGATATGGGTTGA 912 45.29 MSTGTIERKRKSRSRGSDYISETLAKWKVYNKSLDSSSTDERDSVRRAMAKGSKKGCMKGKGGPENSICKYRGVRQRTWGKWVSEIREPNRGKRLWLGTFPNAFEAALAYDKAASVMYGSRARLNFPNMPNSEGSVSSSWADTTGSESSATTSNQSEVCDIRPIGMVKLEAREEEEVGNNHGVELDSRSKEENVTDYITAEDFRNSGMEEVFDVEELLNLIDDIPAWDTDLMGEFSGGNDNGEGFFSEEFSELIYKLQNPDVELLESLNQMEQKASDGDCGFDFLKNYGDGSNDRGNFDFDMG 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 705051 706530 + Conep05aG0017200.1 Cone5ag0169 437187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0169 303 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0169 303 MobiDBLite consensus disorder prediction 35 50 - -
Cone5ag0169 303 MobiDBLite consensus disorder prediction 127 155 - -
Cone5ag0169 303 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Cone5ag0169 303 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0169 303 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0169 303 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Cone5ag0169 303 Gene3D AP2/ERF domain 69 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0169 303 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0169 303 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 225 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cone5ag0169 303 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone5ag0169 303 MobiDBLite consensus disorder prediction 35 62 - -
Cone5ag0169 303 Pfam AP2 domain 69 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1367 Cone-Chr3:32672418 Cone5ag0169 Cone-Chr5:705051 6.60E-47 dispersed
Cone4ag1944 Cone-Chr4:13710209 Cone5ag0169 Cone-Chr5:705051 1.78E-31 dispersed
Cone5ag0169 Cone-Chr5:705051 Cone7ag1858 Cone-Chr7:12016591 6.97E-34 dispersed
Cone11ag0753 Cone-Chr11:5298849 Cone5ag0169 Cone-Chr5:705051 8.58E-70 transposed
Cone1ag1642 Cone-Chr1:57719097 Cone5ag0169 Cone-Chr5:705051 8.04E-166 wgd
Cone10ag0417 Cone-Chr10:1953131 Cone5ag0169 Cone-Chr5:705051 7.69E-31 wgd
Cone11ag1201 Cone-Chr11:9087140 Cone5ag0169 Cone-Chr5:705051 1.40E-21 wgd
Cone18ag0387 Cone-Chr18:1880205 Cone5ag0169 Cone-Chr5:705051 3.88E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46096 PF01176 eIF-1a 1.00E-09 CL0021 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0169 - - - 0.0