Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0176 ATGATCGGAAATTCGCCCTGCGCTTCCTGCAAGTTGCTAAAGCGGCGTTGCGCCAAGGACTGTATCTTCGCGCCTTATTTTCCGTCCGACGACCCCCAAAAGTTCGCCATTGTTCACAAAGTCTTCGGTGCTAGCAACGTTAGCAAGATGCTCCAGGAACTTCCGGTGGAGAAGAGAGGAGATACAGTGAGTAGTCTAGTGTACGAGGCAAATGCAAGAGTGAGGGACCCAGTTTATGGGTGTGTAGGGGCAATATCGTATTTGCAGAATCAAGTATCTGAGCTTCAGATGCAACTTGCTGTGGCTGAGGCCGAGATTCTCTGCATTCAGATGCAGCAAGACCAAGAACAGTATCCCAATCATAACTCCGATCATAGTAATAACAACAGTTTCTTGTCTAATCAAACACTATTAGGAATAAACCCACATGATCATGAACATGATCATGATCATGATCATAGTCAGAAGATAGACATAAATGGTCATCATGCTCATCTGCAGGAATCTTATTTTCTTCAAACCAACCTCCCTGCTCAGTGTCTTAATTTTGCCTCCACCTCGACCAGTAGCAATATCAATCATGTATCTTTCAACAGGGACAGCTTTTTTGGACATGACATGGTTTCTTAA 630 44.29 MIGNSPCASCKLLKRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVEKRGDTVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAEAEILCIQMQQDQEQYPNHNSDHSNNNSFLSNQTLLGINPHDHEHDHDHDHSQKIDINGHHAHLQESYFLQTNLPAQCLNFASTSTSSNINHVSFNRDSFFGHDMVS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 730885 731609 - Conep05aG0017900.1 Cone5ag0176 437194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0176 209 Pfam Lateral organ boundaries (LOB) domain 6 102 IPR004883 -
Cone5ag0176 209 MobiDBLite consensus disorder prediction 117 156 - -
Cone5ag0176 209 MobiDBLite consensus disorder prediction 117 140 - -
Cone5ag0176 209 Coils Coil 85 105 - -
Cone5ag0176 209 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 141 - -
Cone5ag0176 209 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cone5ag0176 209 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0176 Cone-Chr5:730885 Cone8ag1587 Cone-Chr8:11808670 8.47E-48 dispersed
Cone1ag1647 Cone-Chr1:57740210 Cone5ag0176 Cone-Chr5:730885 1.87E-97 wgd
Cone18ag0786 Cone-Chr18:4481951 Cone5ag0176 Cone-Chr5:730885 1.03E-66 wgd
Cone4ag0070 Cone-Chr4:352109 Cone5ag0176 Cone-Chr5:730885 6.14E-51 wgd
Cone5ag0176 Cone-Chr5:730885 Cone7ag0064 Cone-Chr7:276888 4.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46098 PF01210 NAD_Gly3P_dh_N 2.00E-41 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0176 - - - 0.0