Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone5ag0176 | ATGATCGGAAATTCGCCCTGCGCTTCCTGCAAGTTGCTAAAGCGGCGTTGCGCCAAGGACTGTATCTTCGCGCCTTATTTTCCGTCCGACGACCCCCAAAAGTTCGCCATTGTTCACAAAGTCTTCGGTGCTAGCAACGTTAGCAAGATGCTCCAGGAACTTCCGGTGGAGAAGAGAGGAGATACAGTGAGTAGTCTAGTGTACGAGGCAAATGCAAGAGTGAGGGACCCAGTTTATGGGTGTGTAGGGGCAATATCGTATTTGCAGAATCAAGTATCTGAGCTTCAGATGCAACTTGCTGTGGCTGAGGCCGAGATTCTCTGCATTCAGATGCAGCAAGACCAAGAACAGTATCCCAATCATAACTCCGATCATAGTAATAACAACAGTTTCTTGTCTAATCAAACACTATTAGGAATAAACCCACATGATCATGAACATGATCATGATCATGATCATAGTCAGAAGATAGACATAAATGGTCATCATGCTCATCTGCAGGAATCTTATTTTCTTCAAACCAACCTCCCTGCTCAGTGTCTTAATTTTGCCTCCACCTCGACCAGTAGCAATATCAATCATGTATCTTTCAACAGGGACAGCTTTTTTGGACATGACATGGTTTCTTAA | 630 | 44.29 | MIGNSPCASCKLLKRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVEKRGDTVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAEAEILCIQMQQDQEQYPNHNSDHSNNNSFLSNQTLLGINPHDHEHDHDHDHSQKIDINGHHAHLQESYFLQTNLPAQCLNFASTSTSSNINHVSFNRDSFFGHDMVS | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 730885 | 731609 | - | Conep05aG0017900.1 | Cone5ag0176 | 437194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone5ag0176 | 209 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 102 | IPR004883 | - | |
Cone5ag0176 | 209 | MobiDBLite | consensus disorder prediction | 117 | 156 | - | - | |
Cone5ag0176 | 209 | MobiDBLite | consensus disorder prediction | 117 | 140 | - | - | |
Cone5ag0176 | 209 | Coils | Coil | 85 | 105 | - | - | |
Cone5ag0176 | 209 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 141 | - | - | |
Cone5ag0176 | 209 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Cone5ag0176 | 209 | MobiDBLite | consensus disorder prediction | 141 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag0176 | Cone-Chr5:730885 | Cone8ag1587 | Cone-Chr8:11808670 | 8.47E-48 | dispersed | |
Cone1ag1647 | Cone-Chr1:57740210 | Cone5ag0176 | Cone-Chr5:730885 | 1.87E-97 | wgd | |
Cone18ag0786 | Cone-Chr18:4481951 | Cone5ag0176 | Cone-Chr5:730885 | 1.03E-66 | wgd | |
Cone4ag0070 | Cone-Chr4:352109 | Cone5ag0176 | Cone-Chr5:730885 | 6.14E-51 | wgd | |
Cone5ag0176 | Cone-Chr5:730885 | Cone7ag0064 | Cone-Chr7:276888 | 4.20E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46098 | PF01210 | NAD_Gly3P_dh_N | 2.00E-41 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone5ag0176 | - | - | - | 0.0 |