Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0179 ATGGCTTCCCACACCCCTAATCTCGAGTGCCGAATGTACGAGGCCAAGTATCCCGAAGTGGATATGGCCGTAATGATTCAGGTCAAGAACATAGCCGACATGGGCGCCTACGTCTCCCTCCTCGAATACAACAACATCGAGGGCATGATTCTCTTCTCCGAGCTCTCTCGCCGTCGGATTCGTAGCGTTAGCAGCTTGATTAAGGTTGGCCGCATCGAGCCTGTCATGGTGCTGAGAGTTGACAAGGAGAAGGGATACATTGATTTGAGCAAGAGGAGAGTCTCTGAGGAGGATATTCAGGCTTGTGAAGAGAGGTATAACAAGAGCAAGCTCGTTCACTCTATTATGCGTCACGTTGCTGAAACTATGAGCATCGATTTAGAGGAGTTGTATGTCCATGTTGCCTGGCCTTTATACCGGAAATATGGCCATGCTTTTGAGGCATTCAAGGTAGTTGTTACTGATCCTGATTCAGTTTTGAACACACTCACCCGTGAAGTAAGGGAGACTGGTCCTGATGGACAGGAGGTTAGCAAGGTAGTTCCTGCTTTGTCAGAAGATGTAAAAGAAGCGTTGATAAAGAACATTCGGAGAAGAATGACTCCCCAACCATTGAAGATCCGGGCAGACATTGAAATGAAGTGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGATGCTATGCGAAAAGCTGAAGCTGCCGGCAATGATTCTTGTCCTGTTAAAATCAAATTGGTCGCTCCCCCTCTTTATGTTCTAACTACTCACACTCTTGACAAGGAGCAAGGGATAGCAGTTTTAAATGGAGCAATTGTAGCTTGTACTGAAGCAATAGAGCTGCACAAGGGAAAACTTTTGGTGAAGGAAGCAGCCAGAGCAGTGAGTGAACGTGATGACAAATTGCTTGCCGAACACATGGCTAAGCTTGGACAAGACAATGAAGAAATCAGTGGCGATGAGGATAGTGAAGAAGAGGAAGACCCCGGCATGGGAGAAGTTGATGTCGAAAATGCAGGCCCTGGGATAACAGAGTGA 1035 46.67 MASHTPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMSIDLEELYVHVAWPLYRKYGHAFEAFKVVVTDPDSVLNTLTREVRETGPDGQEVSKVVPALSEDVKEALIKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRKAEAAGNDSCPVKIKLVAPPLYVLTTHTLDKEQGIAVLNGAIVACTEAIELHKGKLLVKEAARAVSERDDKLLAEHMAKLGQDNEEISGDEDSEEEEDPGMGEVDVENAGPGITE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 738568 741377 + Conep05aG0018300.1 Cone5ag0179 437197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0179 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676(InterPro)
Cone5ag0179 344 SMART S1_6 19 92 IPR003029 GO:0003676(InterPro)
Cone5ag0179 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676(InterPro)
Cone5ag0179 344 FunFam Eukaryotic translation initiation factor 2 subunit alpha 7 94 - -
Cone5ag0179 344 MobiDBLite consensus disorder prediction 316 332 - -
Cone5ag0179 344 MobiDBLite consensus disorder prediction 306 344 - -
Cone5ag0179 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)
Cone5ag0179 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Cone5ag0179 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Cone5ag0179 344 FunFam Eukaryotic translation initiation factor 2 subunit alpha 95 199 - -
Cone5ag0179 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 198 IPR024054 -
Cone5ag0179 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 6 333 IPR011488 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(PANTHER)|GO:0033290(PANTHER)|GO:0043022(PANTHER)
Cone5ag0179 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Cone5ag0179 344 FunFam Eukaryotic translation initiation factor 2 subunit 1 205 327 - -
Cone5ag0179 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723(InterPro)
Cone5ag0179 344 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Cone5ag0179 344 Gene3D - 6 94 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1054 Cone-Chr14:8899864 Cone5ag0179 Cone-Chr5:738568 1.21E-238 dispersed
Cone15ag1046 Cone-Chr15:8677025 Cone5ag0179 Cone-Chr5:738568 7.79E-235 dispersed
Cone1ag1651 Cone-Chr1:57753154 Cone5ag0179 Cone-Chr5:738568 1.63E-80 dispersed
Cone1ag1650 Cone-Chr1:57751598 Cone5ag0179 Cone-Chr5:738568 3.52E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0179 K03237 - csv:101209681 600.127