Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0192 ATGCCACTTAACTATCCATTGTCTCCATTATTCTCACCTGCAATGATTGCTTCAATCTTGCATAACCCATCAGGCTCTTCTCCAGCTTGTTCTTCGCCTCGATCACCGCCATCTTCATCTCCCTCGCCGTCAAGTACTACTTTTTCTCTTCGGTTTCAGAAACCGTCTAATAATGAATGCCCCAAGGGCGGTGTGATTTTGAACAGGAAAAGACCAGCAAGGATTAACATACCAACTTCCATGTCACTATGTCTCGTTGATACACCAAAGGATGAGAAAGTAGTAATAGATACGCTGGAGGTAGAAGAAAATGGTTATTCAGTTTATTGTAAGAGAGGGAGAAGAGGTTACGCTATGGAGGATCGGTATTCCGCCTTAGTCGATCTTCAAGGAGATTCCAAACAGGCATTCTTTGGTGTGTTTGATGGGCATGGGGGAGCAAAAGCTGCGGAATTTGCCGCGAATAAGATTGGTAAGAACATAATGGATCAAGTGAGTAAGAGGAGAGAAGAGGAAGTCAAGGAAGCCATTAAAGATGGGTACTTAATGACGGATAAAGAACATTTAGGTGAAGGTATTGGTGGAGGTACTTGTTGTGTAACCGCATTGATCCAAAACGATAACCTCATAGTTTCAAATGCCGGTGATTGCCGTGCCGTTATGAGTGTCCTAGGAAATGCAGAAGCCCTAACTTTCGATCACCGCCCTTCAAGAGAAGACGAAAGAAACAGAATTACAACCATGGGCGGTTATGTTGATAAAAGTTGCGGCGGCGTTTGGAGAATAGAGGGATCTCTAGCCGTATCGAGAGGAATCGGAGATCAACATCTTAAACAATGGGTTATTTCAGAGCCAGAGACTAAAGTAATAAGGATTAACAAATCCGAATACGAGTTCTTAATACTTGCTTCTGATGGACTTTGGGACAGGGTTAGTAATCAGGAGGCAGTGGATGTAGTTCGTCGTTCATGCATCGGTGCCGATCATGATCGTCGTATAGAGTCGAAGATGTTGTTTTCTGCTTGTAAAGAACTTGTGGAATTGTCTGTAACAAGAGGCTCGATTGACGACATTAGTGTTGTGATCATTGATTTGGGTTGCTTTGTCTCATGA 1113 43.22 MPLNYPLSPLFSPAMIASILHNPSGSSPACSSPRSPPSSSPSPSSTTFSLRFQKPSNNECPKGGVILNRKRPARINIPTSMSLCLVDTPKDEKVVIDTLEVEENGYSVYCKRGRRGYAMEDRYSALVDLQGDSKQAFFGVFDGHGGAKAAEFAANKIGKNIMDQVSKRREEEVKEAIKDGYLMTDKEHLGEGIGGGTCCVTALIQNDNLIVSNAGDCRAVMSVLGNAEALTFDHRPSREDERNRITTMGGYVDKSCGGVWRIEGSLAVSRGIGDQHLKQWVISEPETKVIRINKSEYEFLILASDGLWDRVSNQEAVDVVRRSCIGADHDRRIESKMLFSACKELVELSVTRGSIDDISVVIIDLGCFVS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 795244 796628 - Conep05aG0019600.1 Cone5ag0192 437210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0192 370 PANTHER PROTEIN PHOSPHATASE 98 364 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone5ag0192 370 MobiDBLite consensus disorder prediction 41 56 - -
Cone5ag0192 370 MobiDBLite consensus disorder prediction 23 65 - -
Cone5ag0192 370 ProSiteProfiles PPM-type phosphatase domain profile. 105 365 IPR001932 -
Cone5ag0192 370 SMART PP2C_4 98 363 IPR001932 -
Cone5ag0192 370 Gene3D - 97 367 IPR036457 -
Cone5ag0192 370 FunFam probable protein phosphatase 2C 25 98 368 - -
Cone5ag0192 370 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169(InterPro)
Cone5ag0192 370 Pfam Protein phosphatase 2C 119 357 IPR001932 -
Cone5ag0192 370 CDD PP2Cc 104 365 IPR001932 -
Cone5ag0192 370 SUPERFAMILY PP2C-like 105 366 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0192 Cone-Chr5:795244 Cone7ag0053 Cone-Chr7:230820 6.75E-124 dispersed
Cone1ag1663 Cone-Chr1:57808702 Cone5ag0192 Cone-Chr5:795244 9.12E-229 wgd
Cone4ag0057 Cone-Chr4:293560 Cone5ag0192 Cone-Chr5:795244 6.00E-123 wgd
Cone4ag1446 Cone-Chr4:11479275 Cone5ag0192 Cone-Chr5:795244 8.89E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0192 K17506 - mdm:114825896 377.481