Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0196 ATGGAAAACGAATTTCATAAACAGAGGAATGGCAAAGCTTTCTGCAAATGCTCTGTCCTGCTCGAATTCGCTGCTTCCGACGACGTGGATGGCTTCAAGAGAGTAGTAGAAGAGATGGGTCTTGACATGGATGAGCCTAGCTTCTGGTATGGAAGATCAATTGGGTCCAAAAAGATGGGCTTTGAAGAAAGAACACCCCTCATGATTGCTGCCCTGTTTGGAAGTACTAAGGTCTTGAACTACTTACTCCGTACTGGAACGGTTGATGTTAACCAAACTTCCGGTTCAGATAAGGTCACTGCCCTTCACTGTGCCACTGCCGGCGGGTCCCACTCCTCGATCGAAACTGCCAAGCTCTTGCTCAGTTCATCTGCTATTTCTGATTGTGTAGATTCGAACGGGTACAAACCAGCTGATGTCATCGCTCCGGCTTTCAACTCAACGGGAAATTCACGGAGGAAGGCAGTTGAAATGTTGCTCAGAGGCAATAATAATCCACTAGAAGAAGAAGAAGAAGAAGAAGAGAAGAAGGTTTTACTGCTCCACTCATCTAAAGAAGGATCTGACAAGAAAGAATATCCGGTTGATATCTCCTTGCCGGATATAAACGAAGGGATTTATGGATCGGATGAGTTCAGAATGTACAGTTTCAAGGTGAAGCCTTGTTCTAGGGCATACTCTCACGACTGGACGGAGTGCCCCTTCGTCCATCCAGGGGAGAACGCTCGCCGGCGGGACCCGAAGAAGTTCCCTTATAGCTGTGTTCCGTGCCCAGAATTCCGTAAAGGTTCTTGCCAGAAGGGAGATTCTTGTGAATATGCTCATGGCGTTTTTGAATCTTGGCTCCACCCGGCCCAGTACAGGACCCGGCTCTGCAAAGATGAAACTGGTTGCACTCGAAAGGTCTGCTTCTTCGCCCACAGGCCCGAAGAGCTTCGGCCTGTTTACGCTTCCACTGGCTCGGCCTTGCCTTCTCCTAGGTCTAATTCGGTTAGTGCTGCGGACATGGCAATCCCTACTTCGTCAGCTCTCAACCCATCGACTTCAACTCCACCCATGTCCCCTTTAGCAAGCGCCACATCTTCACCAAAGAACGTAGGCTTGTGGACCCCACCGGCACTGCAGCTTCCTGGTAGTCGGTTAAAATCTGCTCTGAGCGCGAGAGATTTTAATCTAGAGATGGAATTGATGGATGAGATTTCTCGTCTCTCCTCTCCTAACTGTTGGAGTGGTAAAGATTTCTGCAGGGAAGCTTTAGATTCTTCTTCCACCATGTCTCAGATGCAGGGAATCTCGCTGAATTCTCCAACCGGGCTTTCAATCCGGCAAAACATGAACCAGCTCCGAGCTAGCTACCCCTCTACCAATGCCTTGTTATCATCCTCACCATCGTGGAACCCATCCTCATTTGGTTTCGACTCTTCTGCAGCAGTAGCTGCGGCAGTTATGAATTCTCGATCAGCTGGTTTTGCAAAGCGGAGTCACAGTTTTATCGATCGGGCAGCAGTGAATAATATTCCCGGGCAGAATATGTTGTCATCGAACCATCTTTCGGATTGGGGCTCTCCCAATGGGAAGCTGGATTGGGGTGTTCAAGGAGATGAGCTCAATAAGCTGAAGAAATCTGCTTCATTCGGGATCAGAAACAACATGAATGTTGGAAAACTGGTCGTAGAAGAACCAGATGTTTCGTGGGTTAATTCATTGGTTAAGGATGTTCCTTCGGAGAATTCTGGGAGGTTTGGAGCTTATGAGAGGCTTCCGCCATGGTTGGAGCAGATGTACAGAGATGAGGATCGCATCGTAGCGTAA 1812 48.51 MENEFHKQRNGKAFCKCSVLLEFAASDDVDGFKRVVEEMGLDMDEPSFWYGRSIGSKKMGFEERTPLMIAALFGSTKVLNYLLRTGTVDVNQTSGSDKVTALHCATAGGSHSSIETAKLLLSSSAISDCVDSNGYKPADVIAPAFNSTGNSRRKAVEMLLRGNNNPLEEEEEEEEKKVLLLHSSKEGSDKKEYPVDISLPDINEGIYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKFPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHRPEELRPVYASTGSALPSPRSNSVSAADMAIPTSSALNPSTSTPPMSPLASATSSPKNVGLWTPPALQLPGSRLKSALSARDFNLEMELMDEISRLSSPNCWSGKDFCREALDSSSTMSQMQGISLNSPTGLSIRQNMNQLRASYPSTNALLSSSPSWNPSSFGFDSSAAVAAAVMNSRSAGFAKRSHSFIDRAAVNNIPGQNMLSSNHLSDWGSPNGKLDWGVQGDELNKLKKSASFGIRNNMNVGKLVVEEPDVSWVNSLVKDVPSENSGRFGAYERLPPWLEQMYRDEDRIVA 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 813615 816205 - Conep05aG0020000.1 Cone5ag0196 437214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0196 603 SMART ANK_2a 97 129 IPR002110 GO:0005515(InterPro)
Cone5ag0196 603 SMART ANK_2a 62 92 IPR002110 GO:0005515(InterPro)
Cone5ag0196 603 ProSiteProfiles Zinc finger C3H1-type profile. 251 278 IPR000571 GO:0046872(InterPro)
Cone5ag0196 603 Gene3D - 6 185 IPR036770 -
Cone5ag0196 603 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 276 IPR000571 GO:0046872(InterPro)
Cone5ag0196 603 Gene3D - 252 314 - -
Cone5ag0196 603 ProSiteProfiles Ankyrin repeat region circular profile. 62 86 - -
Cone5ag0196 603 PANTHER UNKEMPT FAMILY MEMBER 55 572 IPR045234 -
Cone5ag0196 603 MobiDBLite consensus disorder prediction 340 364 - -
Cone5ag0196 603 Pfam Ankyrin repeats (3 copies) 59 124 IPR002110 GO:0005515(InterPro)
Cone5ag0196 603 ProSiteProfiles Ankyrin repeat profile. 62 86 IPR002110 GO:0005515(InterPro)
Cone5ag0196 603 SMART c3hfinal6 286 309 IPR000571 GO:0046872(InterPro)
Cone5ag0196 603 SMART c3hfinal6 251 277 IPR000571 GO:0046872(InterPro)
Cone5ag0196 603 FunFam Zinc finger CCCH domain-containing protein 66 209 277 - -
Cone5ag0196 603 SUPERFAMILY Ankyrin repeat 18 139 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0196 Cone-Chr5:813615 Cone7ag0724 Cone-Chr7:4337825 1.77E-52 dispersed
Cone1ag1210 Cone-Chr1:55944624 Cone5ag0196 Cone-Chr5:813615 0 wgd
Cone1ag0567 Cone-Chr1:5761316 Cone5ag0196 Cone-Chr5:813615 6.22E-191 wgd
Cone5ag0196 Cone-Chr5:813615 Cone5ag1074 Cone-Chr5:4765337 2.21E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46101 PF00854 PTR2 1.40E-107 CL0015 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0196 - - - 0.0