Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone5ag0200 ATGACGAAGTTTCCCTTTCCCATCTCGATCACCTTCACCGTAACCTTACTTGTCGTCCAACTTGTTGCTCCAATCCATGCCCTCGGCTCTGGCTCCACCCTCGCAGTCAGCTACGGCTCCGCCACCGTCTGCGGCATCGCCGCCGAGCAGCAGACACACCGCATACTCTGCTTCCGAAACGGTCAAATCCTCTACATAGAACCCGATATCTCATTCTCATCCATTTCGGGCGGAGAAAACACCTTCTGCGGCGTTCGCTCAGGCGGTTACAGTCTTCATTGCTGGGACTACGATTTTTCAAACTCCACCTTCTCACGCAAACGACTCTATTACAACGATACCTTTTTACTCGATAGCGTCTCAATCGGCGACGATCAAATTTGCGCCACGCTGGCTAATACCGGTAATGTCAGTTGCTGGAGACAAGGTATTGGTCCTAATGAGCCCGTCGAAATCCCGCCCGAACAGTTTATCTCAACCTCGTCCGGGTTCGGGTTTTCTTGCGGGTTATTGAAAACCAATAGATCGGTTCGATGCTGGGGAAGAAACGATTCAATCGCTAGACAGATCGAGAACGAGTTTACGAATATTTCAATGCTGAGTCTTGTAGCGGGGGGGTCCCACGTTTGCGGGTTGAACATTTCCGGGGTTTTAATCTGCAAAGGGAACAATGATTTCGGGCAATTGGATATTCCGTCGGATACGGTTTCCGGTTTCGCCGAATTAGCACTCGGAGCGAGCTATAGCTGTGGAATCCGACATTTGAATCGAACCGTGGTTTGTTGGGGAAACGGCGGGAACTTATCAGTTAAGGAAATTCAGGAAACTTCGTTCGAACTAATCGTTTCTGGCTCGAATTTCACTTGTGGATTAACTTCTAGTAATCTTACAGTTATGTGTTGGGGACCAGGCTGGCCTCAATCAAGCTCTAATTCAATCTCTCTCCCGAAGATTCTTCCCGGTCCTTGCGTTGAATCGCCGTGCAGCGATTGCGGTATATATCCTCTGTCTCAGTCTCTCTGTCCCTCTCCCTCTGGTTCCGAGAATGTTTGCAAACGCTGTCTTCCTCAAACTACGGTCTGGACCCCACCACCCCCTCCGGCTTTGCTTCCGGCATCTTCACCGTCCAGAGCTTTAACAAGAGGTTTACTGGCCTTCGCCATTGTCGGATCAGTCGGAGCATTTGCAGGTATATGCTCTGTAATTTACTGTTTATGGACTGGAGTTTGTTTCGGGCACAAAAAGATACACAATTCAGTCCAACCAACGATCACCAGAGCAGCCAGTTCAAACGGCGTTTCAGCGCCACACACTCATAATAATAATAACAACAACAGTCCGCCTTCAAGATCGTCTACGATTCGACGACAGGGGTCCAGACTTATGAGACGACAGAGAAGCGGAACATCATCGAAGCATACAGATAAAGCAGAGGAGTTTTCTCTATCTGAGCTTGCAATAGCAACTAATGATTTCTCTCTAGAAAACAAGATCGGAGCTGGAAGTTTTGGGGTTGTGTACAAAGGGAAGTTATCAGACGGTCGTGAGGTAGCGATCAAGAGAAGCGAAACGGGTCTTAAGACGAAGAAATTCCAAGAGAAAGAAAGCGCATTTGACTCGGAACTGGCGTTCTTGTCCCGCCTTCATCACAAGCATTTAGTTAAGCTTGTCGGTTATTGCGAAGAGGAGGAGGAAAGACTCCTCGTTTACGAGTACATGAAAAACGGTGCGCTTTACGATCATTTACACGACAAAAACAACGTCGAGAAGAGCAGTAGCGTTTTGAATTCGTGGAGAATGAGGATCAAGATCGCTCTAGACGCGGCTCGAGGAATCGAGTATCTTCATAATTATGCCGTCCCTCCAATAATTCATCGAGACATAAAGTCTTCAAACATACTCCTCGACGAGAACTGGACTGCCCGAGTGTCGGATTTTGGGCTGTCATTAATGGGCCCAGAATCGGACCGGGATTACAGACCGACAAAAGCGGCCGGGACGGTTGGTTATATCGATCCGGAATACTATGGGCTTAATGTGCTGACTGCCAAGAGTGATGTTTATGGGCTAGGGGTTGTATTGTTGGAGCTTTTGACGGGGAAGAGGGCGATATTTAAGAGCGGGGGGAATGGAGGGGGGACGACGCCTATAAGCGTGGTAGACTTTGCAGTGCCGGTAATCCTGGCGGGAGAATTGGGGAGGATTTTGGACAGTAGAGTAGGGAAGGTGGAGATGAATGAAGGGGAAGCGGTTGAGCTGGTGGGTTATACGGCGATGCACTGTGTTAATTTGGAAGGGAAAGAAAGGCCTACTATGACTGACATTGTTGCTAATTTGGAGCGAGCTTTGGCTCTGTGTGATGATAGCCATGGCAGCATCTCTAGTGGCACCATGTCCATTGTTTCTGATTGA 2412 48.63 MTKFPFPISITFTVTLLVVQLVAPIHALGSGSTLAVSYGSATVCGIAAEQQTHRILCFRNGQILYIEPDISFSSISGGENTFCGVRSGGYSLHCWDYDFSNSTFSRKRLYYNDTFLLDSVSIGDDQICATLANTGNVSCWRQGIGPNEPVEIPPEQFISTSSGFGFSCGLLKTNRSVRCWGRNDSIARQIENEFTNISMLSLVAGGSHVCGLNISGVLICKGNNDFGQLDIPSDTVSGFAELALGASYSCGIRHLNRTVVCWGNGGNLSVKEIQETSFELIVSGSNFTCGLTSSNLTVMCWGPGWPQSSSNSISLPKILPGPCVESPCSDCGIYPLSQSLCPSPSGSENVCKRCLPQTTVWTPPPPPALLPASSPSRALTRGLLAFAIVGSVGAFAGICSVIYCLWTGVCFGHKKIHNSVQPTITRAASSNGVSAPHTHNNNNNNSPPSRSSTIRRQGSRLMRRQRSGTSSKHTDKAEEFSLSELAIATNDFSLENKIGAGSFGVVYKGKLSDGREVAIKRSETGLKTKKFQEKESAFDSELAFLSRLHHKHLVKLVGYCEEEEERLLVYEYMKNGALYDHLHDKNNVEKSSSVLNSWRMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDENWTARVSDFGLSLMGPESDRDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKSGGNGGGTTPISVVDFAVPVILAGELGRILDSRVGKVEMNEGEAVELVGYTAMHCVNLEGKERPTMTDIVANLERALALCDDSHGSISSGTMSIVSD 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 832971 835522 + Conep05aG0020400.1 Cone5ag0200 437218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone5ag0200 803 FunFam Serine/threonine-protein kinase-like protein CCR4 573 797 - -
Cone5ag0200 803 Gene3D Phosphorylase Kinase; domain 1 453 572 - -
Cone5ag0200 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone5ag0200 803 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524(InterPro)
Cone5ag0200 803 MobiDBLite consensus disorder prediction 428 456 - -
Cone5ag0200 803 MobiDBLite consensus disorder prediction 428 476 - -
Cone5ag0200 803 SUPERFAMILY RCC1/BLIP-II 68 305 IPR009091 -
Cone5ag0200 803 Gene3D Transferase(Phosphotransferase) domain 1 573 792 - -
Cone5ag0200 803 SMART serkin_6 492 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0200 803 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 31 793 IPR044815 GO:0004674(InterPro)
Cone5ag0200 803 ProSiteProfiles Protein kinase domain profile. 492 783 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0200 803 FunFam serine/threonine-protein kinase-like protein CCR1 462 572 - -
Cone5ag0200 803 Pfam Protein kinase domain 493 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone5ag0200 803 Gene3D - 119 325 IPR009091 -
Cone5ag0200 803 SUPERFAMILY Protein kinase-like (PK-like) 469 779 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0200 Cone-Chr5:832971 Cone19ag1094 Cone-Chr19:7940086 1.32E-66 dispersed
Cone11ag0620 Cone-Chr11:3883312 Cone5ag0200 Cone-Chr5:832971 1.49E-90 transposed
Cone4ag1198 Cone-Chr4:10092783 Cone5ag0200 Cone-Chr5:832971 2.29E-109 transposed
Cone1ag1213 Cone-Chr1:55958536 Cone5ag0200 Cone-Chr5:832971 0 wgd
Cone18ag0394 Cone-Chr18:1936130 Cone5ag0200 Cone-Chr5:832971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82819 PF04588 HIG_1_N 2.60E-08 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone5ag0200 - - - 0.0