Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone5ag0210 | ATGGGCTCTACGTACAGGGATCGGACGACGGAATTTCGATCTCTGTCCGAGACCCTGAAGAAGATCGGAGTAACGGCCACCGTGAGTGGAGGTGGAAATGATCCAACTCCGTCGAAACCATTCATGCTACCCGGCGCTTCTAGATCGGAGTTCAACAAGAAGGCCTCGCGGATCGGGTTGGGGATCCACGAATCCTCTCAGAAGATTTCCAGGCTTGCTCAATTGGGGAAAAGATCGTCGATGTTTGACGATCCAACTTTGGAAATCCAGGAATTAACTTCACTGATAAAGAACGAAATAACGACTCTGAATGTTGCTCTCTCCGATTTGCAAACAATTCAAAACATGGAGATAGCTGATGGTAATTATTCTGAGGATAGAGTTGTTCACTCAACGGCTGTCTGTGATGACCTGAAGAGCAGACTTATGGGAGCTACAAAACAGCTTCAAAATGTACTAACCACAAGAACAGAGAATATCAAGGCCCATGAGAGTCGGAAGCAGATATTCTCTGCACATTTGTCAAGAGAAAACCCCTTCCGAAATCAGGCTAAAACTGTGACTCAGCCACCTCCATGGTCAAGCTCACCAAATAACCTTGAGGGTGCACAAACATCAGCATTGCCATCAAATGGAGCTCAAATTGGCAGCCAATTAAGGCGAAGGTCAGCTGTGGAGAATACTCCATCTCAGCAGATGGAAATGTCTATGTTACAGCAGGTGGTTCCTATGCAGGAAAATTATTCACAAAGTCGTGCAGTTGCTCTTCATAATGTAGAATCGACGATTTCAGAACTCAGTGGAATCTTTACCCATTTGGCCACTATGGTTGCACATCAAGGGGAACTGGCTATCAGGATTGATGATAACATGGATGAGTCGCTGGGAAACGTGGAAGGTGCTAACAGTGCTCTGTTAAGGCATCTAAACCAAATATCATCAAATAGATGGCTTCTACTCAAAATATTTGCCATTATAGTAATCTTCCTCATGATCTTCATCTTCATCATGGCTTGA | 1017 | 44.64 | MGSTYRDRTTEFRSLSETLKKIGVTATVSGGGNDPTPSKPFMLPGASRSEFNKKASRIGLGIHESSQKISRLAQLGKRSSMFDDPTLEIQELTSLIKNEITTLNVALSDLQTIQNMEIADGNYSEDRVVHSTAVCDDLKSRLMGATKQLQNVLTTRTENIKAHESRKQIFSAHLSRENPFRNQAKTVTQPPPWSSSPNNLEGAQTSALPSNGAQIGSQLRRRSAVENTPSQQMEMSMLQQVVPMQENYSQSRAVALHNVESTISELSGIFTHLATMVAHQGELAIRIDDNMDESLGNVEGANSALLRHLNQISSNRWLLLKIFAIIVIFLMIFIFIMA | 338 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 884831 | 887221 | - | Conep05aG0021400.1 | Cone5ag0210 | 437228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone5ag0210 | 338 | MobiDBLite | consensus disorder prediction | 175 | 231 | - | - | |
| Cone5ag0210 | 338 | Gene3D | - | 46 | 301 | - | - | |
| Cone5ag0210 | 338 | PANTHER | SYNTAXIN | 50 | 329 | IPR045242 | GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cone5ag0210 | 338 | ProSitePatterns | Syntaxin / epimorphin family signature. | 252 | 291 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Cone5ag0210 | 338 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 21 | IPR021538 | - | |
| Cone5ag0210 | 338 | SUPERFAMILY | t-snare proteins | 47 | 301 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Cone5ag0210 | 338 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 246 | 308 | IPR000727 | - | |
| Cone5ag0210 | 338 | MobiDBLite | consensus disorder prediction | 172 | 231 | - | - | |
| Cone5ag0210 | 338 | CDD | SNARE_syntaxin5 | 249 | 334 | - | - | |
| Cone5ag0210 | 338 | SMART | tSNARE_6 | 241 | 308 | IPR000727 | - | |
| Cone5ag0210 | 338 | Pfam | SNARE domain | 283 | 334 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0645 | Cone-Chr20:3923629 | Cone5ag0210 | Cone-Chr5:884831 | 3.47E-81 | dispersed | |
| Cone5ag0210 | Cone-Chr5:884831 | Cone17ag1057 | Cone-Chr17:7945526 | 1.46E-95 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone5ag0210 | K08490 | - | csv:101213786 | 478.404 |